Gene omics information

Query gene ID	Ta.6759.2.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.6759.2.S1_x_at	BJ211299	-	-	2e+0	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	S.X.	H.G.	Please select
0.80	92.2	Ta.6759.2.S1_at	BJ211299	-	-	2e+0	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	S.X.	H.G.	Please select
0.67	86.3	TaAffx.51594.1.S1_at	CA723204	-	-	1e+0	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	S.X.	H.G.	Please select
0.53	74.9	Ta.6762.3.S1_at	BJ246546	-	-	1e+0	At5g61490	-	S.X.	H.G.	Please select
0.44	64.5	Ta.25608.2.S1_a_at	CA739102	-	-	3e+0	At1g77765	unknown protein	S.X.	H.G.	Please select
0.35	49.8	TaAffx.85941.1.S1_at	CA618291	-	-	2e+1	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.9	99.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
19.2	99.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
14.7	99.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
14.1	99.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
13.2	99.5	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
13.1	99.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.5	99.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.6	99.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.8	98.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
7.2	98.5	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	640	Ta.6759.2.S1_at	BJ211299	-	-	2e+0	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	C.G.	S.X.	Please select
0.02	2e-1	36	TaAffx.61558.1.S1_at	BU672274	-	-	4e-3	At1g80280	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.05	2e-1	36	TaAffx.6111.1.S1_at	CA691303	-	-	3e-1	At5g25490	zinc finger (Ran-binding) family protein	C.G.	S.X.	Please select
0.04	2e-1	36	TaAffx.28829.1.S1_at	CA655709	-	-	7e-2	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	C.G.	S.X.	Please select
0.05	2e-1	36	Ta.9054.2.S1_at	CA597299	-	-	2e-2	At2g43540	unknown protein	C.G.	S.X.	Please select
0.05	2e-1	36	Ta.9054.2.S1_a_at	CA597299	-	-	2e-2	At2g43540	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	36	Ta.7254.1.S1_at	BJ252429	-	-	3e-1	At2g20670	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Ta.5291.1.S1_at	BJ285211	-	-	4e+1	At5g43570	serine-type endopeptidase inhibitor	C.G.	S.X.	Please select
0.04	2e-1	36	Ta.13920.1.S1_at	BQ743892	-	-	5e+0	At3g24860	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	Arabidopsis thaliana	At5g63310	836451	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in auxin-regulated processes, partly through the modulation of auxin transport. H-bonding with His-197 inside the nucleotide-binding pocket is critical for NDPK2 functioning.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-1	36	Glycine max	Gma.5805.1.S1_at	BM522598	-	-	1e+1	At5g36230	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	C.G.	S.X.	Please select
0.05	1e+0	32	Hordeum vulgare	HVSMEh0094M14f_s_at	HVSMEh0094M14f	-	-	2e-1	At4g21215	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	36	Oryza sativa	Os12g0178800	AK063709.1	-	Hypothetical protein	3e-2	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	8e-1	34	Populus trichocarpa	PtpAffx.5499.1.A1_at	CV245700	-	-	4e-1	At4g22140	DNA binding / protein binding / zinc ion binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-1	32	Vitis vinifera	1609137_at	CB977893	-	-	4e+0	At5g51110	4-alpha-hydroxytetrahydrobiopterin dehydratase	C.G.	S.X.	Please select
0.04	1e+0	32	Zea mays	Zm.3313.2.A1_x_at	BM072909	-	-	4e+0	At2g27250	CLV3 (CLAVATA3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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