Gene omics information

Query gene ID	Ta.6666.2.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.6666.2.S1_at	CA640317	-	-	5e-12	At3g49420	Got1-like family protein	S.X.	H.G.	Please select
0.61	82.0	TaAffx.96904.1.S1_at	BJ268172	-	-	1e+0	At5g14690	unknown protein	S.X.	H.G.	Please select
0.50	72.4	Ta.6666.2.S1_x_at	CA640317	-	-	5e-12	At3g49420	Got1-like family protein	S.X.	H.G.	Please select
0.50	72.4	Ta.6666.3.S1_x_at	CA720211	-	-	4e-3	At3g03180	Got1-like family protein	S.X.	H.G.	Please select
0.44	64.5	TaAffx.37968.1.S1_s_at	BJ256890	-	-	2e-1	At3g16570	RALFL23 (ralf-like 23)	S.X.	H.G.	Please select
0.22	27.1	TaAffx.32308.1.S1_at	CA597142	-	-	1e+0	At2g19670	PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.7	99.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.6	99.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5	98.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1	97.5	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.9	97.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1021	Ta.6666.2.S1_a_at	CA640317	-	-	5e-12	At3g49420	Got1-like family protein	C.G.	S.X.	Please select
1.00	0	1021	Ta.6666.2.S1_x_at	CA640317	-	-	5e-12	At3g49420	Got1-like family protein	C.G.	S.X.	Please select
0.42	4e-170	597	Ta.6666.1.S1_x_at	BQ170970	-	-	1e-11	At3g49420	Got1-like family protein	C.G.	S.X.	Please select
0.42	4e-170	597	Ta.6666.1.S1_s_at	BQ170970	-	-	1e-11	At3g49420	Got1-like family protein	C.G.	S.X.	Please select
0.45	4e-111	400	Ta.6666.3.S1_x_at	CA720211	-	-	4e-3	At3g03180	Got1-like family protein	C.G.	S.X.	Please select
0.05	7e-2	38	TaAffx.80463.1.S1_at	CA696699	-	-	3e-1	At3g03180	Got1-like family protein	C.G.	S.X.	Please select
0.02	7e-2	38	Ta.1511.2.S1_x_at	CA600977	-	-	8e-7	At5g45930	CHLI2 (MAGNESIUM CHELATASE I2)	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.6111.1.S1_at	CA691303	-	-	3e-1	At5g25490	zinc finger (Ran-binding) family protein	C.G.	S.X.	Please select
0.05	3e-1	36	TaAffx.27247.1.S1_at	CA679242	-	-	4e+0	At3g57460	catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	5e-12	71	Arabidopsis thaliana	At3g49420	824104	Got1-like family protein	F:molecular_function unknown;P:vesicle-mediated transport;C:cellular_component unknown;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	2e-6	54	Glycine max	GmaAffx.85571.1.S1_at	BE611743	-	-	2e-1	At3g03180	Got1-like family protein	C.G.	S.X.	Please select
0.46	3e-163	573	Hordeum vulgare	Contig9611_at	Contig9611	-	-	6e-7	At3g49420	Got1-like family protein	C.G.	S.X.	Please select
0.30	3e-92	339	Oryza sativa	Os03g0209400	AK059829.1	-	Got1-like protein family protein	9e-6	At5g01430	Got1-like family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	4e-13	75	Populus trichocarpa	PtpAffx.1321.1.S1_a_at	CV231255	hypothetical protein	-	2e-43	At3g49420	Got1-like family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	6e-18	89	Vitis vinifera	1613620_at	CF607400	hypothetical protein LOC100255785	-	2e-40	At3g49420	Got1-like family protein	C.G.	S.X.	Please select
0.33	8e-77	286	Zea mays	Zm.4348.1.A1_at	AI795723	golgi transport 1 protein B	-	7e-6	At3g49420	Got1-like family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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