Gene omics information

Query gene ID	Ta.6587.2.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	74.9	Ta.6587.2.S1_x_at	CF133308	-	-	3e-1	At2g40100	LHCB4.3 (light harvesting complex PSII)	S.X.	H.G.	Please select
0.73	89.1	Ta.3543.1.A1_at	BJ220370	-	-	3e-1	At2g17785	zinc-binding protein-related	S.X.	H.G.	Please select
0.47	67.9	Ta.6587.2.S1_a_at	CF133308	-	-	3e-1	At2g40100	LHCB4.3 (light harvesting complex PSII)	S.X.	H.G.	Please select
0.43	62.2	TaAffx.12303.1.S1_at	CD938363	-	-	1e-1	At4g37240	unknown protein	S.X.	H.G.	Please select
0.38	54.7	TaAffx.13383.1.A1_at	BG904557	-	-	8e-1	At1g17800	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.34	48.1	TaAffx.76554.1.A1_at	BJ307578	-	-	1e+0	At5g54320	unknown protein	S.X.	H.G.	Please select
0.33	46.9	Ta.27957.1.S1_at	CK198915	-	-	1e-1	At2g42180	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.5	97.8	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.4	97.7	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM139920	Anther diplotene-anaphaseI rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.3	96.7	GSM139919	Anther diplotene-anaphaseI rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.2	96.6	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.81	0	942	Ta.6587.2.S1_a_at	CF133308	-	-	3e-1	At2g40100	LHCB4.3 (light harvesting complex PSII)	C.G.	S.X.	Please select
0.53	0	652	Ta.6587.1.S1_a_at	BQ166105	-	-	3e-1	At3g62580	-	C.G.	S.X.	Please select
0.18	8e-36	151	TaAffx.12407.1.S1_x_at	BJ266791	-	-	6e-4	At2g45710	40S ribosomal protein S27 (RPS27A)	C.G.	S.X.	Please select
0.18	8e-36	151	TaAffx.12407.1.S1_at	BJ266791	-	-	6e-4	At2g45710	40S ribosomal protein S27 (RPS27A)	C.G.	S.X.	Please select
0.22	8e-33	141	Ta.15954.1.A1_at	BJ240520	-	-	4e+0	At5g37590	binding	C.G.	S.X.	Please select
0.14	6e-21	101	TaAffx.113509.1.S1_at	CA610563	-	-	4e+0	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	C.G.	S.X.	Please select
0.11	6e-15	81	Ta.30426.1.A1_at	CK205430	-	-	1e+0	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	C.G.	S.X.	Please select
0.10	4e-13	75	Ta.6697.1.S1_at	BJ310148	-	-	5e+0	At5g27944	sequence-specific DNA binding / transcription factor	C.G.	S.X.	Please select
0.03	2e-2	40	Ta.4859.1.S1_at	BJ273006	-	-	6e+0	At3g12600	atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At2g40100	818599	LHCB4.3 (light harvesting complex PSII)	Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.70228.1.S1_at	BE348203	-	-	1e-2	At5g40690	-	C.G.	S.X.	Please select
0.07	6e-7	54	Hordeum vulgare	Contig6656_at	Contig6656	-	-	2e+0	At1g66560	WRKY64	C.G.	S.X.	Please select
0.03	6e-1	36	Oryza sativa	OsAffx.8666.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.91816.1.S1_at	DN484981	-	-	8e-1	At4g07868	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-2	38	Vitis vinifera	1618554_at	CF208496	hypothetical protein LOC100254355	-	2e-1	At5g62610	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.16594.2.S1_at	CK371100	-	-	4e-7	At5g65620	peptidase M3 family protein / thimet oligopeptidase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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