Gene omics information

Query gene ID	Ta.6548.2.S1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.6548.2.S1_a_at	BJ307506	-	-	4e+0	At5g07930	MCT2 (mei2 C-Terminal RRM only like 2)	S.X.	H.G.	Please select
0.32	44.4	Ta.7193.3.S1_at	CA718160	-	-	1e+1	At5g08400	unknown protein	S.X.	H.G.	Please select
0.32	44.4	TaAffx.118620.1.S1_at	BJ316617	-	-	1e+0	At2g31560	unknown protein	S.X.	H.G.	Please select
0.27	35.6	TaAffx.105451.1.S1_at	CA734135	-	-	1e+0	At3g06730	thioredoxin family protein	S.X.	H.G.	Please select
0.26	33.6	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	S.X.	H.G.	Please select
0.25	32.1	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.3	99.0	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
8.4	98.9	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.7	97.9	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM111187	genotype B68 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.5	95.4	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM111197	genotype J15 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.5	92.5	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1098	Ta.6548.2.S1_at	BJ307506	-	-	4e+0	At5g07930	MCT2 (mei2 C-Terminal RRM only like 2)	C.G.	S.X.	Please select
0.44	2e-165	581	Ta.6548.1.S1_a_at	BQ166743	-	-	3e-2	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	C.G.	S.X.	Please select
0.37	3e-87	321	Ta.6548.3.S1_x_at	CA613549	-	-	9e-1	At2g45190	AFO (ABNORMAL FLORAL ORGANS)	C.G.	S.X.	Please select
0.17	9e-17	87	Ta.11101.1.S1_at	CD900076	-	-	2e-1	At2g41730	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	Ta.22980.3.S1_x_at	BJ285062	-	-	1e+0	At5g48530	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Ta.22980.1.S1_x_at	CK198778	-	-	2e-1	At4g20260	DREPP plasma membrane polypeptide family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Ta.22980.1.S1_s_at	CK198778	-	-	2e-1	At4g20260	DREPP plasma membrane polypeptide family protein	C.G.	S.X.	Please select
0.04	1e+0	34	TaAffx.85623.1.S1_at	CA621085	-	-	3e-1	At1g21850	sks8 (SKU5 Similar 8)	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.54410.1.S1_at	CA681971	-	-	4e+0	At3g55490	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	32	Arabidopsis thaliana	At5g07930	830687	MCT2 (mei2 C-Terminal RRM only like 2)	a member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	32	Glycine max	PsAffx.psZG010xA12f_at	PsAffx.psZG010xA12f	-	-	1e+0	At5g52200	unknown protein	C.G.	S.X.	Please select
0.40	1e-125	448	Hordeum vulgare	Contig8488_at	Contig8488	-	-	9e-6	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	C.G.	S.X.	Please select
0.23	6e-44	178	Oryza sativa	Os01g0963300	AK067544.1	-	Syntaxin 61 (AtSYP61) (Osmotic stess-sensitivemutant 1)	8e-6	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	4e-10	65	Populus trichocarpa	Ptp.1902.1.S1_at	CK095920	hypothetical protein	-	2e-43	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	3e-7	54	Vitis vinifera	1610844_at	BQ794886	hypothetical LOC100257700	-	5e-18	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	C.G.	S.X.	Please select
0.23	2e-65	248	Zea mays	Zm.3182.1.A1_at	CK827062	hypothetical protein LOC100273880	-	2e-1	At3g13310	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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