Gene omics information

Query gene ID	Ta.645.1.S1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	82.0	Ta.645.1.S1_a_at	CK212406	-	-	9e+0	At2g28550	RAP2.7 (RELATED TO AP2.7)	S.X.	H.G.	Please select
0.83	93.4	Ta.1147.3.S1_x_at	BG908516	-	-	2e+1	At5g41420	unknown protein	S.X.	H.G.	Please select
0.81	92.4	Ta.1147.2.S1_a_at	CA599073	-	-	8e+0	At4g18692	unknown protein	S.X.	H.G.	Please select
0.77	90.8	Ta.9368.1.S1_a_at	CD861507	-	-	1e-1	At2g27390	proline-rich family protein	S.X.	H.G.	Please select
0.75	89.8	Ta.1147.1.A1_x_at	BG908398	-	-	3e+0	At5g55720	pectate lyase family protein	S.X.	H.G.	Please select
0.74	89.4	Ta.1147.1.A1_at	BG908398	-	-	3e+0	At5g55720	pectate lyase family protein	S.X.	H.G.	Please select
0.74	89.4	Ta.1147.2.S1_x_at	CA599073	-	-	8e+0	At4g18692	unknown protein	S.X.	H.G.	Please select
0.72	88.3	Ta.1147.3.S1_at	BG908516	-	-	2e+1	At5g41420	unknown protein	S.X.	H.G.	Please select
0.69	86.9	Ta.2737.1.S1_at	CK211424	-	-	9e+0	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	S.X.	H.G.	Please select
0.61	82.0	Ta.12065.1.S1_at	BQ171511	-	-	2e+0	At3g45000	VPS24.2	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.2	98.8	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.3	98.6	GSM250887	TcLr34_3dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.2	98.5	GSM250893	TcLr34_3dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.2	98.5	GSM250911	TcLr34_7dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0	98.0	GSM250909	TcLr1_7dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM250891	TcLr1_3dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM250917	TcLr34_7dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM143498	Jupateco_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.4	97.7	GSM143501	Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.1	97.5	GSM250885	TcLr1_3dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	1653	Ta.645.1.S1_x_at	CK212406	-	-	9e+0	At2g28550	RAP2.7 (RELATED TO AP2.7)	C.G.	S.X.	Please select
0.36	4e-110	398	Ta.645.2.S1_x_at	CA618739	-	-	4e+0	At2g41100	TCH3 (TOUCH 3)	C.G.	S.X.	Please select
0.13	9e-34	145	Ta.645.3.A1_x_at	CA669322	-	-	4e+0	At1g48330	unknown protein	C.G.	S.X.	Please select
0.13	9e-34	145	Ta.645.3.A1_at	CA669322	-	-	4e+0	At1g48330	unknown protein	C.G.	S.X.	Please select
0.03	1e-14	81	Ta.21559.1.S1_x_at	BJ285115	-	-	7e-4	At3g49360	glucosamine/galactosamine-6-phosphate isomerase family protein	C.G.	S.X.	Please select
0.04	4e-14	79	Ta.28320.1.S1_s_at	CK217025	-	-	9e+0	At5g19855	unknown protein	C.G.	S.X.	Please select
0.04	2e-13	77	Ta.28609.1.S1_x_at	CK217364	-	-	8e-15	At2g19750	40S ribosomal protein S30 (RPS30A)	C.G.	S.X.	Please select
0.04	2e-13	77	Ta.28609.1.S1_at	CK217364	-	-	8e-15	At2g19750	40S ribosomal protein S30 (RPS30A)	C.G.	S.X.	Please select
0.03	7e-13	75	TaAffx.98930.1.A1_at	CK214676	CBFIIId-12.1 /// CBFIIId-B12	-	9e+0	At4g34700	complex 1 family protein / LVR family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	9e+0	32	Arabidopsis thaliana	At2g28550	817403	RAP2.7 (RELATED TO AP2.7)	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent, vegetative to reproductive phase transition;C:nucleus;POBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e+1	32	Glycine max	PsAffx.psMC006xG09f_s_at	PsAffx.psMC006xG09f	-	-	1e+1	At4g08280	-	C.G.	S.X.	Please select
0.77	0	967	Hordeum vulgare	Contig4773_at	Contig4773	-	-	8e+0	At5g62720	integral membrane HPP family protein	C.G.	S.X.	Please select
0.30	4e-99	363	Oryza sativa	Os02g0556800	AK100187.1	-	Conserved hypothetical protein	3e-2	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+1	32	Populus trichocarpa	PtpAffx.218831.1.S1_at	pmrna34570	hypothetical protein	-	5e+0	At2g26520	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	7e-1	34	Vitis vinifera	1622481_x_at	CF568921	-	-	3e-2	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	C.G.	S.X.	Please select
0.30	1e-77	289	Zea mays	Zm.10811.2.S1_at	BM079148	-	-	8e+0	At4g14730	transmembrane protein-related	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage