Gene omics information

Query gene ID	Ta.6428.1.S1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.0	Ta.6428.1.S1_s_at	BG608133	-	-	2e-5	At5g47620	heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative	S.X.	H.G.	Please select
0.71	88.0	Ta.2319.2.S1_a_at	CA671429	-	-	8e+0	At4g08270	-	S.X.	H.G.	Please select
0.63	83.1	Ta.22513.1.S1_at	CA640463	-	-	5e-5	At1g22910	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.56	78.6	Ta.7382.1.S1_a_at	CD862833	-	-	1e+0	At3g13224	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.44	64.5	Ta.6406.1.S1_at	BJ303896	-	-	2e-5	At1g29370	kinase-related	S.X.	H.G.	Please select
0.39	56.1	Ta.13761.1.S1_s_at	AL820456	-	-	2e+0	At2g25052	unknown protein	S.X.	H.G.	Please select
0.34	48.1	Ta.6255.1.S1_at	CK167744	-	-	3e-16	At5g61970	signal recognition particle-related / SRP-related	S.X.	H.G.	Please select
0.33	46.9	Ta.735.1.S1_at	CK215595	-	-	2e-66	At3g62120	tRNA synthetase class II (G, H, P and S) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.9	96.1	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.8	96.0	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.6	95.6	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.6	95.6	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.6	95.6	GSM139929	Anther immature pollen rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.6	95.6	GSM139924	Anther telophaseI-telophaseII rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.6	95.6	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4	95.2	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	0	654	Ta.6428.3.S1_x_at	CA638017	-	-	1e+0	At4g29030	glycine-rich protein	C.G.	S.X.	Please select
0.27	1e-135	484	Ta.6428.2.S1_a_at	CA620598	-	-	1e+0	At1g27860	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	38	TaAffx.57590.1.S1_at	CA626735	-	-	9e+0	At5g38090	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	38	Ta.8226.1.S1_at	BE217050	18S subunit ribosomal protein	-	9e-3	At5g59790	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	36	TaAffx.83813.1.S1_at	CA650476	-	-	9e-10	At5g55550	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.01	1e+0	36	Ta.25723.1.S1_at	CD374048	-	-	1e-3	At1g75370	SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative	C.G.	S.X.	Please select
0.02	4e+0	34	TaAffx.48006.1.S1_at	CD894469	-	-	5e+0	At4g12600	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	C.G.	S.X.	Please select
0.02	4e+0	34	TaAffx.112215.2.S1_at	CA626013	-	-	3e-4	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.02	4e+0	34	TaAffx.110527.1.S1_at	CA658100	-	-	9e-1	At3g43260	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-5	52	Arabidopsis thaliana	At5g47620	834812	heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-5	52	Glycine max	GmaAffx.112.1.S1_at	AI966759	-	-	7e-2	At4g26650	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.90	0	2896	Hordeum vulgare	Contig7024_at	Contig7024	-	-	2e-4	At5g55550	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.37	0	676	Oryza sativa	Os10g0470900	AK059172.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	2e-1	At4g31430	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.33745.1.S1_at	BP935626	-	-	5e+0	At5g28885	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	1e+0	34	Vitis vinifera	1614242_at	CF211976	hypothetical protein LOC100243579	-	1e-1	At5g60800	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.20	2e-31	137	Zea mays	ZmAffx.169.1.A1_at	AI664986	-	-	2e-1	At2g24765	ARF3 (ADP-RIBOSYLATION FACTOR 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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