Gene omics information

Query gene ID	Ta.6346.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.6346.1.S1_at	CK169170	-	-	3e-63	At5g06600	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	S.X.	H.G.	Please select
0.73	89.1	Ta.13180.2.S1_at	BJ263702	-	-	2e-5	At5g20165	unknown protein	S.X.	H.G.	Please select
0.67	86.3	Ta.13180.2.S1_x_at	BJ263702	-	-	2e-5	At5g20165	unknown protein	S.X.	H.G.	Please select
0.53	74.9	Ta.1905.1.A1_a_at	CA657392	-	-	3e-24	At2g30110	ATUBA1	S.X.	H.G.	Please select
0.40	58.4	Ta.9607.1.A1_a_at	CA708572	-	-	5e+0	At5g24510	60s acidic ribosomal protein P1, putative	S.X.	H.G.	Please select
0.19	22.4	Ta.3887.3.A1_s_at	BJ248686	-	-	2e-2	At1g53780	ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding / peptidyl-prolyl cis-trans isomerase	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	95.4	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM139925	Anther tetrads rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4	95.2	GSM139924	Anther telophaseI-telophaseII rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.3	95.0	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2	94.8	GSM139915	Anther pre-meiosis rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.0	94.3	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.9	94.0	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM139921	Anther diplotene-anaphaseI rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM139912	Anther pre-meiosis rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.7	93.3	GSM111187	genotype B68 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	0	735	TaAffx.78575.1.S1_at	CA730651	-	-	4e+0	At4g17850	-	C.G.	S.X.	Please select
0.24	6e-139	496	Ta.26943.1.A1_at	CD491294	-	-	3e-8	At3g11910	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)	C.G.	S.X.	Please select
0.06	8e-55	216	Ta.6346.2.S1_s_at	BJ275130	-	-	2e+0	At1g08380	PSAO (photosystem I subunit O)	C.G.	S.X.	Please select
0.06	8e-55	216	Ta.6346.2.S1_at	BJ275130	-	-	2e+0	At1g08380	PSAO (photosystem I subunit O)	C.G.	S.X.	Please select
0.22	5e-50	200	Ta.25992.1.S1_at	CK206968	-	-	6e-44	At5g06600	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	C.G.	S.X.	Please select
0.14	1e-28	129	Ta.1587.1.S1_s_at	CA652320	-	-	1e-34	At5g06600	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	C.G.	S.X.	Please select
0.14	1e-28	129	Ta.1587.1.S1_at	CA652320	-	-	1e-34	At5g06600	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	C.G.	S.X.	Please select
0.02	4e-4	48	Ta.6691.2.A1_a_at	BJ309815	-	-	5e-12	At3g11910	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)	C.G.	S.X.	Please select
0.07	4e-4	48	Ta.6691.3.S1_a_at	BJ304135	-	-	3e-7	At3g11910	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	3e-63	244	Arabidopsis thaliana	At5g06600	830548	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	Encodes a ubiquitin-specific protease.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	8e-34	147	Glycine max	Gma.16719.1.S1_at	BI970910	-	-	1e-15	At3g11910	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)	C.G.	S.X.	Please select
0.85	0	3977	Hordeum vulgare	Contig3677_at	Contig3677	-	-	4e-22	At3g11910	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)	C.G.	S.X.	Please select
0.62	0	1267	Oryza sativa	Os07g0163800	NM_186432.1	-	Ubiquitin-specific protease 12	2e-89	At5g06600	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	3e-73	278	Populus trichocarpa	PtpAffx.206449.1.S1_s_at	pmrna12797	hypothetical protein	-	2e-160	At3g11910	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	1e-56	220	Vitis vinifera	1611989_at	CF209510	hypothetical protein LOC100244518	-	2e-89	At5g06600	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	C.G.	S.X.	Please select
0.20	1e-125	450	Zea mays	Zm.8970.1.A1_at	CO527395	hypothetical protein LOC100193936	-	5e-1	At3g11910	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage