CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.6113.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 Ta.6113.1.S1_at CA668966 - - 3e+0 At5g22300 NIT4 (NITRILASE 4) S.X. H.G.
0.80 92.2 Ta.6113.2.S1_x_at AJ611253 - - 2e+0 At2g46810 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.67 86.3 Ta.6101.1.S1_at CD937323 - - 2e-10 At3g48890 ATMP2 S.X. H.G.
0.67 86.3 Ta.6113.1.S1_a_at CA668966 - - 3e+0 At5g22300 NIT4 (NITRILASE 4) S.X. H.G.
0.60 81.0 Ta.3922.1.S1_at CD454673 - - 3e-6 At5g22300 NIT4 (NITRILASE 4) S.X. H.G.
0.50 72.4 Ta.6101.2.S1_a_at CA697971 - - 3e-16 At3g48890 ATMP2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.3 97.6 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.1 97.5 GSM143505 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.5 96.9 GSM143507 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.3 96.7 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9 96.1 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9 96.1 GSM138171 genotype C31 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.6 95.6 GSM143519 Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.4 95.2 GSM143518 Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.3 95.0 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2 94.8 GSM250914 Tc_7dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.85 0 2763 Ta.6113.1.S1_a_at CA668966 - - 3e+0 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.47 0 950 Ta.6113.2.S1_x_at AJ611253 - - 2e+0 At2g46810 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.20 4e-77 289 TaAffx.6306.1.S1_at CA688404 - - 1e+0 At2g31620 receptor-like protein kinase-related C.G. S.X.
0.42 4e-40 167 Ta.3922.1.S1_at CD454673 - - 3e-6 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.13 3e-22 107 TaAffx.121798.1.S1_at BE216991 - - 5e-4 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.19 3e-22 107 Ta.3922.3.S1_x_at CA623436 - - 6e+0 At3g44310 NIT1 C.G. S.X.
0.19 3e-22 107 Ta.3922.3.S1_at CA623436 - - 6e+0 At3g44310 NIT1 C.G. S.X.
0.09 1e-15 85 Ta.3922.2.S1_at CA601742 - - 3e-1 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.03 6e-5 50 Ta.13174.1.S1_at BQ295333 - - 6e+0 At5g60490 FLA12 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e+0 34 Arabidopsis thaliana At5g22300 832290 NIT4 (NITRILASE 4) encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway. - - - C.G. S.X.
0.20 3e-23 111 Glycine max Gma.16036.1.A1_at BI974474 - - 4e-29 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.82 0 2052 Hordeum vulgare Contig12037_at Contig12037 - - 2e-4 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.56 0 757 Oryza sativa Os02g0635000 AK069855.1 - Nitrilase 1 3e+0 At4g38680 GRP2 (GLYCINE RICH PROTEIN 2) C.G. S.X.
0.04 1e-6 56 Populus trichocarpa PtpAffx.14282.1.S1_at DN490949 - - 4e-24 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.07 2e-8 59 Vitis vinifera 1622423_at CB342360 similar to Bifunctional nitrilase/nitrile hydratase NIT4B - 1e-13 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.55 0 680 Zea mays Zm.14611.1.S1_at AY156979.1 nitrilase 1 - 2e-14 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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