Gene omics information

Query gene ID	Ta.6052.2.S1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	Ta.6052.2.S1_a_at	CA661259	-	-	3e-8	At3g27740	CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)	S.X.	H.G.	Please select
0.46	66.8	Ta.5407.2.S1_x_at	CA735601	-	-	2e+0	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	S.X.	H.G.	Please select
0.46	66.8	Ta.5407.2.S1_at	CA735601	-	-	2e+0	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	S.X.	H.G.	Please select
0.40	58.4	Ta.5407.1.S1_x_at	CN012562	-	-	1e-7	At1g77370	glutaredoxin, putative	S.X.	H.G.	Please select
0.25	32.1	Ta.10431.1.S1_a_at	CD454717	-	-	2e-7	At2g02960	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.23	29.0	Ta.3718.2.S1_a_at	CD895847	-	-	4e-52	At2g26140	ftsh4 (FtsH protease 4)	S.X.	H.G.	Please select
0.19	22.4	Ta.9887.2.S1_a_at	CK212824	-	-	8e-2	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	S.X.	H.G.	Please select
0.15	17.1	Ta.9903.1.S1_at	CK154650	-	-	8e+0	At5g51105	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	96.9	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.2	96.6	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.9	96.1	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.7	95.8	GSM143503	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.6	95.6	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.5	95.4	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.5	95.4	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.2	94.8	GSM143520	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.0	94.3	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	5e-10	65	Ta.5312.1.S1_a_at	CA642442	-	-	1e-6	At2g17200	ubiquitin family protein	C.G.	S.X.	Please select
0.05	5e-10	65	Ta.5312.1.S1_x_at	CA642442	-	-	1e-6	At2g17200	ubiquitin family protein	C.G.	S.X.	Please select
0.04	3e-5	50	TaAffx.6604.1.S1_x_at	CA682010	-	-	4e+0	At5g44310	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	C.G.	S.X.	Please select
0.03	3e-5	50	Ta.1717.1.S1_at	CD452698	-	-	1e-2	At1g55320	AAE18 (ACYL-ACTIVATING ENZYME 18)	C.G.	S.X.	Please select
0.03	3e-5	50	Ta.1717.1.S1_x_at	CD452698	-	-	1e-2	At1g55320	AAE18 (ACYL-ACTIVATING ENZYME 18)	C.G.	S.X.	Please select
0.08	1e-4	48	TaAffx.27392.1.S1_at	CA677365	-	-	4e+0	At4g33880	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.10	1e-4	48	Ta.20775.1.A1_x_at	CA624202	-	-	1e+0	At5g40970	unknown protein	C.G.	S.X.	Please select
0.09	2e-3	44	TaAffx.85778.1.S1_at	CA619710	-	-	1e+0	At5g40830	methyltransferase	C.G.	S.X.	Please select
0.07	2e-3	44	TaAffx.84332.1.S1_at	CA639385	-	-	4e+0	At1g79170	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	3e-8	59	Arabidopsis thaliana	At3g27740	822396	CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)	carbamoyl phosphate synthetase small subunit mRNA (carA),	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-5	52	Glycine max	Gma.13457.1.S1_at	CD398655	-	-	4e-35	At3g27740	CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)	C.G.	S.X.	Please select
0.40	0	801	Hordeum vulgare	Contig4969_at	Contig4969	-	-	4e-18	At3g27740	CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)	C.G.	S.X.	Please select
0.27	2e-57	224	Oryza sativa	Os02g0708100	AK059653.1	-	Carbamoyl-phosphate synthase small chain (EC6.3.5.5) (Carbamoyl- phosphate synthetase glutaminechain)	3e-9	At3g27740	CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Populus trichocarpa	PtpAffx.218983.1.S1_at	pmrna34757	hypothetical protein	-	3e-4	At5g12260	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e-1	34	Vitis vinifera	1616724_at	CF513188	-	-	1e+0	At5g47060	senescence-associated protein-related	C.G.	S.X.	Please select
0.23	1e-39	163	Zea mays	Zm.725.1.A1_at	AY107740.1	hypothetical protein LOC100193467	-	7e-14	At3g27740	CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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