Gene omics information

Query gene ID	Ta.6012.1.S1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	Ta.6012.1.S1_a_at	BJ266501	-	-	3e+0	At5g16640	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please select
0.67	86.3	Ta.6012.2.A1_x_at	BJ294301	-	-	4e+0	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	S.X.	H.G.	Please select
0.40	58.4	Ta.8039.1.S1_at	BQ161168	-	-	4e-2	At4g01897	unknown protein	S.X.	H.G.	Please select
0.19	22.4	Ta.5742.1.A1_x_at	BJ288789	-	-	2e-1	At2g29400	TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)	S.X.	H.G.	Please select
0.10	11.3	Ta.1057.1.A1_at	BQ171746	-	-	8e-5	At5g01180	PTR5 (PEPTIDE TRANSPORTER 5)	S.X.	H.G.	Please select
0.04	5.8	Ta.21242.1.A1_at	BG905239	-	-	2e+1	At5g39670	calcium-binding EF hand family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.0	99.3	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.7	99.1	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.6	99.1	GSM324485	Si- B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.1	99.0	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.8	98.7	GSM324495	Si+ B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.9	98.0	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.8	97.9	GSM324494	Si+ B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.6	97.8	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.2	97.5	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.0	97.4	GSM298085	Crown tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	0	666	Ta.6012.2.A1_x_at	BJ294301	-	-	4e+0	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	C.G.	S.X.	Please select
0.37	4e-107	389	TaAffx.86242.1.S1_x_at	CA613303	-	-	2e-1	At3g26510	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	C.G.	S.X.	Please select
0.37	4e-107	389	TaAffx.86242.1.S1_at	CA613303	-	-	2e-1	At3g26510	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	C.G.	S.X.	Please select
0.06	3e-3	44	Ta.25363.1.A1_at	CD491278	-	-	7e-16	At3g51895	SULTR3	C.G.	S.X.	Please select
0.02	7e-1	36	TaAffx.57410.1.S1_at	CA629775	-	-	6e-5	At5g60920	COB (COBRA)	C.G.	S.X.	Please select
0.02	7e-1	36	TaAffx.37646.1.S1_at	BJ270277	-	-	3e-1	At2g06010	ORG4 (OBP3-RESPONSIVE GENE 4)	C.G.	S.X.	Please select
0.02	7e-1	36	TaAffx.17365.2.A1_at	BJ296973	-	-	2e-14	At1g60470	AtGolS4 (Arabidopsis thaliana galactinol synthase 4)	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.93426.1.S1_at	BJ211294	-	-	2e-5	At2g34900	IMB1 (IMBIBITION-INDUCIBLE 1)	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.5394.1.S1_at	CA712351	-	-	3e-1	At2g46780	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e+0	34	Arabidopsis thaliana	At5g16640	831526	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	GmaAffx.90284.1.S1_s_at	CF806009	-	-	7e-2	At3g21360	electron carrier/ oxidoreductase	C.G.	S.X.	Please select
0.49	1e-158	559	Hordeum vulgare	Contig20387_at	Contig20387	-	-	2e+0	At1g61060	F-box family protein	C.G.	S.X.	Please select
0.46	3e-174	613	Oryza sativa	OsAffx.3180.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Populus trichocarpa	PtpAffx.31085.2.S1_a_at	CK090431	hypothetical protein	-	2e-17	At5g41050	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e-1	36	Vitis vinifera	1618272_at	CK136958.1	-	-	1e+0	At4g07950	DNA-directed RNA polymerase III family protein	C.G.	S.X.	Please select
0.46	2e-79	295	Zea mays	Zm.10545.1.A1_at	BQ538220	hypothetical protein LOC100193294	-	6e-1	At5g10180	AST68	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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