CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.5839.1.S1_x_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.94 98.9 Ta.5839.1.S1_x_at BJ291864 - - 9e-2 At3g05675 protein binding S.X. H.G.
0.95 99.1 Ta.131.1.S1_at BE430809 low-molecular-weight glutenin storage protein - 7e-1 At3g46613 RTFL4 (ROTUNDIFOLIA LIKE 4) S.X. H.G.
0.94 98.9 Ta.24114.11.S1_x_at BJ237788 Alpha/beta-gliadin precursor - 3e+0 At5g53590 auxin-responsive family protein S.X. H.G.
0.94 98.9 Ta.1257.2.A1_x_at BJ242255 - - 7e-1 At1g54830 NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3) S.X. H.G.
0.93 98.7 Ta.160.1.S1_x_at U86028.1 pre-gamma-gliadin B-I - 7e-1 At5g62575 unknown protein S.X. H.G.
0.93 98.7 Ta.19.1.S1_at CD902219 wheat type V thionin - 2e+0 At5g07600 oleosin / glycine-rich protein S.X. H.G.
0.93 98.7 Ta.24114.18.S1_x_at BJ239750 - - 1e+0 At5g10520 RBK1 (Rop Binding protein Kinases 1) S.X. H.G.
0.92 98.5 Ta.23142.7.S1_x_at BQ244524 - - 9e-3 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) S.X. H.G.
0.92 98.5 Ta.24963.1.S1_x_at BJ241536 HMW glutenin - 1e+0 At5g65790 MYB68 (MYB DOMAIN PROTEIN 68) S.X. H.G.
0.92 98.5 Ta.24114.14.S1_x_at BJ241838 Gamma-gliadin /// Gamma-gliadin - 3e+0 At3g20865 AGP40 (arabinogalactan-protein 40) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
128.9 100.0 GSM314288 tissue type: 22 DAP endosperm - rep2 GSE12508 Transcription patterns during wheat development
121.0 100.0 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
117.1 100.0 GSM314287 tissue type: 22 DAP endosperm - rep1 GSE12508 Transcription patterns during wheat development
0.9 73.8 GSM315202 target strand labeled: Sense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
0.0 30.7 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
0.0 30.7 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
0.0 30.7 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
0.0 30.7 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
0.0 30.7 GSM298064 Crown tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
0.0 30.7 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.85 0 690 Ta.5839.1.S1_at BJ291864 - - 9e-2 At3g05675 protein binding C.G. S.X.
0.72 1e-81 303 Ta.6187.1.S1_x_at BQ167028 - - 3e-1 At5g04030 unknown protein C.G. S.X.
0.72 1e-81 303 Ta.6187.1.S1_at BQ167028 - - 3e-1 At5g04030 unknown protein C.G. S.X.
0.30 1e-56 220 TaAffx.106472.1.S1_at CA718330 - - 4e+0 At3g32896 unknown protein C.G. S.X.
0.32 1e-53 210 Ta.5839.2.S1_at CA710201 - - 4e+0 At4g05497 F-box family protein C.G. S.X.
0.16 2e-36 153 TaAffx.79390.1.S1_at CA716848 - - 7e-1 At5g28040 transcription regulator C.G. S.X.
0.25 2e-27 123 Ta.28983.1.S1_at CD453780 - - 3e+1 At5g23405 high mobility group (HMG1/2) family protein C.G. S.X.
0.17 2e-24 113 Ta.23397.1.S1_x_at BJ292777 - - 3e-2 At4g33660 unknown protein C.G. S.X.
0.14 5e-16 85 Ta.23397.2.S1_x_at CA718270 - - 1e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-2 38 Arabidopsis thaliana At3g05675 819735 protein binding F:protein binding;P:unknown;C:unknown;P - - - C.G. S.X.
0.03 1e-1 38 Glycine max PsAffx.C118000036_at PsAffx.C118000036 - - 1e-1 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.26 9e-19 93 Hordeum vulgare Contig946_at Contig946 - - 1e+0 At3g63290 unknown protein C.G. S.X.
0.04 2e-1 38 Oryza sativa Os11g0122700 9639.m00200 - - 1e+1 At4g29610 cytidine deaminase, putative / cytidine aminohydrolase, putative C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.88707.1.A1_at CV255964 - - 2e+0 At3g06080 unknown protein C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1618440_s_at CD801284 hypothetical protein LOC100256565 - 2e-2 At5g15600 SP1L4 (SPIRAL1-LIKE4) C.G. S.X.
0.03 3e+0 32 Zea mays Zm.6803.1.A1_a_at CA401942 hypothetical protein LOC100273027 - 1e+0 At5g08330 TCP family transcription factor, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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