Gene omics information

Query gene ID Ta.5623.1.S1_x_at
Gene name
Organism Triticum aestivum


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7790.8Ta.5623.1.S1_x_atCK197632--2e+0At3g212404CL2 (4-COUMARATE:COA LIGASE 2)S.X.H.G.
0.8393.4Ta.5623.2.S1_atCA650542--2e+1At5g19729unknown proteinS.X.H.G.
0.6081.0TaAffx.99402.2.S1_s_atCD939178--3e-1At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)S.X.H.G.
0.6081.0Ta.30738.1.S1_x_atCA635391--3e-1At3g50250unknown proteinS.X.H.G.
0.5576.8Ta.22537.1.S1_x_atCA632198--3e-1At3g50250unknown proteinS.X.H.G.
0.3854.7Ta.17028.1.A1_a_atCK209181--5e+0At5g60200Dof-type zinc finger domain-containing proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
15.599.6GSM246399SB3_Stem_ rep2_at anthesisGSE9767Genotypic differences in water soluble carbohydrate metabolism in stem
13.899.5GSM246389SB10_Stem_ rep2_at anthesisGSE9767Genotypic differences in water soluble carbohydrate metabolism in stem
13.199.4GSM246388SB10_Stem_ rep1_at anthesisGSE9767Genotypic differences in water soluble carbohydrate metabolism in stem
12.499.4GSM246395SB69_Stem_ rep2_at anthesisGSE9767Genotypic differences in water soluble carbohydrate metabolism in stem
10.399.2GSM246386SB169_Stem_ rep1_at anthesisGSE9767Genotypic differences in water soluble carbohydrate metabolism in stem
10.399.2GSM246398SB3_Stem_ rep1_at anthesisGSE9767Genotypic differences in water soluble carbohydrate metabolism in stem
9.699.1GSM246385SB165_Stem_ rep2_at anthesisGSE9767Genotypic differences in water soluble carbohydrate metabolism in stem
9.499.1GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat development
9.299.0GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat development
9.099.0GSM246392SB109_Stem_ rep1_at anthesisGSE9767Genotypic differences in water soluble carbohydrate metabolism in stem
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.442e-99363TaAffx.30205.2.S1_s_atCA627137--1e-4At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.381e-97357TaAffx.108196.1.S1_atCA690860--1e+1At5g47520AtRABA5a (Arabidopsis Rab GTPase homolog A5a)C.G.S.X.
0.251e-57224Ta.17797.1.S1_atCA624399--4e+0At5g39330unknown proteinC.G.S.X.
0.251e-51204TaAffx.128713.1.S1_atCK215460--1e-8At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.281e-48194TaAffx.8533.2.S1_atCA627108--4e-3At3g212304CL5 (4-coumarate:CoA ligase 5)C.G.S.X.
0.212e-47190Ta.5623.2.S1_a_atCA650542--2e+1At5g19729unknown proteinC.G.S.X.
0.212e-47190Ta.5623.2.S1_atCA650542--2e+1At5g19729unknown proteinC.G.S.X.
0.201e-29131TaAffx.8533.1.S1_s_atCA623870--5e-6At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.158e-28125Ta.29966.1.S1_atCA683806--6e-1At5g11500unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.062e+034Arabidopsis thalianaAt3g212408216784CL2 (4-COUMARATE:COA LIGASE 2)encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.---C.G.S.X.
0.052e-757Glycine maxGma.4928.1.S1_a_atAF002259.14-coumarate:CoA ligase isoenzyme 2-4e-9At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.5401263Hordeum vulgareContig4676_atContig4676--6e-2At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.360686Oryza sativaOs02g0177600AK070083.1-4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1)3e-7At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.099e-1375Populus trichocarpaPtpAffx.12056.3.S1_a_atCV2594944-Coumarate:CoA ligase-5e-22At1g650604CL3C.G.S.X.
0.091e-859Vitis vinifera1609307_atCD715818hypothetical protein LOC100254698-3e-16At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.431e-89329Zea maysZm.1390.1.A1_atAY106966.1--3e-3At3g212304CL5 (4-coumarate:CoA ligase 5)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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