CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.5590.2.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 Ta.5590.2.S1_at CK214552 - - 7e-7 At5g17170 ENH1 (enhancer of sos3-1) S.X. H.G.
0.60 81.0 TaAffx.123205.1.S1_at CD861867 - - 3e-6 At1g51110 plastid-lipid associated protein PAP / fibrillin family protein S.X. H.G.
0.40 58.4 Ta.881.1.S1_a_at CK213344 - - 9e+0 At4g24974 - S.X. H.G.
0.36 51.9 Ta.13198.1.S1_at CK216728 - - 8e+0 At5g27247 unknown protein S.X. H.G.
0.25 32.1 Ta.3890.1.S1_a_at AJ440547 - - 2e-15 At1g34000 OHP2 (ONE-HELIX PROTEIN 2) S.X. H.G.
0.17 19.8 Ta.12460.1.A1_at BG908612 - - 2e-1 At5g48420 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.4 99.3 GSM324493 Si+ B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.7 98.9 GSM324485 Si- B- rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.4 98.9 GSM324495 Si+ B+ rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.4 98.9 GSM324491 Si+ B- rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.7 98.7 GSM324486 Si- B- rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
6.4 98.2 GSM298065 Leaf tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.0 98.0 GSM324492 Si+ B- rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.7 97.9 GSM324484 Si- B- rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.5 97.8 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.4 97.7 GSM143493 Jupateco_Lr34 (resistant), mock inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 3e-123 442 Ta.5590.1.S1_x_at CK213247 - - 1e+0 At1g37140 MCT1 (mei2 C-Terminal RRM only like 1) C.G. S.X.
0.34 7e-121 434 Ta.5590.3.S1_x_at CA598218 - - 1e+0 At5g02610 60S ribosomal protein L35 (RPL35D) C.G. S.X.
0.34 7e-121 434 Ta.5590.3.S1_at CA598218 - - 1e+0 At5g02610 60S ribosomal protein L35 (RPL35D) C.G. S.X.
0.03 7e-10 65 TaAffx.93953.1.S1_x_at CA671468 - - 2e-1 At3g07670 SET domain-containing protein C.G. S.X.
0.04 7e-10 65 TaAffx.27628.1.S1_at CA673059 - - 8e-1 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.03 7e-10 65 Ta.21362.1.A1_x_at CA675159 - - 8e-19 At3g07670 SET domain-containing protein C.G. S.X.
0.03 7e-10 65 Ta.21362.1.A1_at CA675159 - - 8e-19 At3g07670 SET domain-containing protein C.G. S.X.
0.04 3e-9 63 Ta.25916.2.S1_at CA673879 - - 4e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.04 1e-8 61 TaAffx.82388.1.S1_at CA672817 - - 8e-1 At3g22260 OTU-like cysteine protease family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 7e-7 56 Arabidopsis thaliana At5g17170 831581 ENH1 (enhancer of sos3-1) F:protein binding, electron carrier activity, metal ion binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;BPO - - - C.G. S.X.
0.19 1e-33 145 Glycine max Gma.13129.1.S1_at CD404336 - - 2e-62 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.76 0 1378 Hordeum vulgare Contig4014_at Contig4014 - - 5e-10 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.50 7e-138 492 Oryza sativa Os08g0162600 AK060121.1 - Rubredoxin-type Fe(Cys)4 protein family protein 6e-22 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.15 3e-19 97 Populus trichocarpa PtpAffx.133398.1.A1_at CV278665 hypothetical protein - 8e-27 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.17 4e-33 141 Vitis vinifera 1610210_at CA812095 hypothetical protein LOC100263114 - 8e-28 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.38 7e-82 303 Zea mays Zm.3400.1.S1_at CN845120 - - 2e-9 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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