Gene omics information

Query gene ID	Ta.5509.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.95	99.1	Ta.5509.1.S1_at	CA669976	-	-	1e-17	At1g76690	OPR2	S.X.	H.G.	Please select
0.56	78.6	Ta.4059.1.S1_a_at	BJ263315	-	-	6e-42	At3g09550	protein binding	S.X.	H.G.	Please select
0.52	73.7	TaAffx.19824.2.S1_s_at	CA679087	-	-	1e-9	At4g27020	unknown protein	S.X.	H.G.	Please select
0.52	73.7	TaAffx.17098.1.S1_at	BQ803435	-	-	3e-2	At2g45410	LBD19 (LOB DOMAIN-CONTAINING PROTEIN 19)	S.X.	H.G.	Please select
0.51	73.0	Ta.11699.1.A1_at	BQ170617	-	-	4e+0	At3g20370	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select
0.48	69.0	TaAffx.110862.1.S1_s_at	CA652750	-	-	7e-1	At2g38695	unknown protein	S.X.	H.G.	Please select
0.47	67.9	TaAffx.108337.1.S1_s_at	CA689479	-	-	9e-13	At2g30650	catalytic	S.X.	H.G.	Please select
0.46	66.8	Ta.10740.1.S1_x_at	CK195106	-	-	8e+0	At3g60770	40S ribosomal protein S13 (RPS13A)	S.X.	H.G.	Please select
0.46	66.8	Ta.13260.1.A1_at	BJ239696	-	-	4e-4	At5g62960	unknown protein	S.X.	H.G.	Please select
0.45	65.2	TaAffx.50947.1.S1_at	CA733029	-	-	2e-5	At1g71020	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.9	99.8	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
14.1	99.5	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
11.8	99.3	GSM143520	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.5	99.1	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
9.5	99.1	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.4	98.9	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.1	98.8	GSM143519	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.8	98.7	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.7	98.7	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.8	98.4	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.75	0	1039	Ta.30735.1.S1_at	CN009367	-	-	1e-17	At1g76680	OPR1	C.G.	S.X.	Please select
0.27	5e-153	541	Ta.5509.2.S1_at	CA611291	-	-	5e+0	At3g55252	-	C.G.	S.X.	Please select
0.60	2e-121	436	Ta.9073.1.S1_at	CD454241	-	-	6e-20	At1g76690	OPR2	C.G.	S.X.	Please select
0.27	6e-94	345	Ta.30735.2.S1_at	CA604500	-	-	2e-5	At1g76680	OPR1	C.G.	S.X.	Please select
0.18	2e-84	313	Ta.5509.3.S1_at	CA604882	-	-	1e-2	At1g17990	12-oxophytodienoate reductase, putative	C.G.	S.X.	Please select
0.18	2e-84	313	Ta.5509.3.S1_x_at	CA604882	-	-	1e-2	At1g17990	12-oxophytodienoate reductase, putative	C.G.	S.X.	Please select
0.26	3e-59	230	TaAffx.29434.1.S1_at	CA642975	-	-	2e+1	At5g38950	germin-like protein-related	C.G.	S.X.	Please select
0.02	1e-2	42	TaAffx.95953.1.S1_at	CA735492	-	-	4e+0	At5g36700	PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1)	C.G.	S.X.	Please select
0.02	1e-2	42	TaAffx.90510.1.S1_at	CA735395	-	-	3e+0	At1g23130	Bet v I allergen family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	1e-17	91	Arabidopsis thaliana	At1g76690	844002	OPR2	Encodes one of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	8e-14	79	Glycine max	GmaAffx.67883.1.S1_at	BG046605	-	-	1e-15	At1g76690	OPR2	C.G.	S.X.	Please select
0.89	0	2048	Hordeum vulgare	Contig5146_at	Contig5146	-	-	4e-21	At1g76690	OPR2	C.G.	S.X.	Please select
0.54	0	1130	Oryza sativa	Os.15627.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	8e-17	89	Populus trichocarpa	PtpAffx.26497.1.S1_at	CK105060	-	-	3e-52	At1g76690	OPR2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.25	2e-23	109	Vitis vinifera	1607601_at	CF209956	hypothetical protein LOC100244746	-	2e-15	At1g09400	12-oxophytodienoate reductase, putative	C.G.	S.X.	Please select
0.62	3e-174	611	Zea mays	Zm.7548.1.A1_at	BM078903	12-oxo-phytodienoic acid reductase5	-	5e-11	At1g76690	OPR2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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