Gene omics information

Query gene ID	Ta.5442.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	67.9	Ta.5442.1.S1_at	CK193982	-	-	2e-3	At2g47580	U1A (SPLICEOSOMAL PROTEIN U1A)	S.X.	H.G.	Please select
0.73	89.1	Ta.28206.2.S1_x_at	BJ318149	-	-	1e+0	At5g48530	unknown protein	S.X.	H.G.	Please select
0.73	89.1	Ta.28206.1.S1_at	BQ162426	-	-	3e-2	At3g02220	unknown protein	S.X.	H.G.	Please select
0.67	86.3	Ta.28206.2.S1_a_at	BJ318149	-	-	1e+0	At5g48530	unknown protein	S.X.	H.G.	Please select
0.39	56.1	Ta.10537.2.A1_at	BQ804919	-	-	2e-9	At5g60990	DEAD/DEAH box helicase, putative (RH10)	S.X.	H.G.	Please select
0.35	49.8	Ta.9748.2.S1_x_at	BJ238030	-	-	1e+0	At1g04240	SHY2 (SHORT HYPOCOTYL 2)	S.X.	H.G.	Please select
0.27	35.6	Ta.3376.1.S1_s_at	BJ308421	-	-	2e-1	At4g02450	glycine-rich protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	98.3	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.3	98.2	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM298093	Crown tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	9e-136	484	Ta.5442.3.S1_a_at	CA598439	-	-	7e-2	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	C.G.	S.X.	Please select
0.35	9e-136	484	Ta.5442.3.S1_x_at	CA598439	-	-	7e-2	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	C.G.	S.X.	Please select
0.17	2e-28	127	Ta.5442.2.S1_at	CA600703	-	-	7e+0	At5g10070	RNase L inhibitor protein-related	C.G.	S.X.	Please select
0.17	2e-28	127	Ta.5442.2.S1_x_at	CA600703	-	-	7e+0	At5g10070	RNase L inhibitor protein-related	C.G.	S.X.	Please select
0.06	7e-7	56	Ta.9408.1.S1_at	BJ309615	-	-	2e-4	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	C.G.	S.X.	Please select
0.04	2e-4	48	TaAffx.30652.1.S1_at	CA623146	-	-	3e-4	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	C.G.	S.X.	Please select
0.01	6e-1	36	Ta.12387.2.S1_s_at	CD874108	-	-	9e-1	At4g25990	CIL	C.G.	S.X.	Please select
0.01	6e-1	36	Ta.12387.2.S1_x_at	CD874108	-	-	9e-1	At4g25990	CIL	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.93197.1.A1_at	BJ220681	-	-	1e+0	At5g13050	5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-3	44	Arabidopsis thaliana	At2g47580	819371	U1A (SPLICEOSOMAL PROTEIN U1A)	encodes spliceosomal protein U1A	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	2e-11	71	Glycine max	Gma.1414.1.S1_a_at	BU579127	-	-	7e-17	At2g47580	U1A (SPLICEOSOMAL PROTEIN U1A)	C.G.	S.X.	Please select
0.76	0	1396	Hordeum vulgare	Contig6207_at	Contig6207	-	-	1e-4	At2g47580	U1A (SPLICEOSOMAL PROTEIN U1A)	C.G.	S.X.	Please select
0.51	5e-151	535	Oryza sativa	Os.9766.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	6e-5	50	Populus trichocarpa	PtpAffx.5498.1.A1_at	CV234927	-	-	3e-18	At2g47580	U1A (SPLICEOSOMAL PROTEIN U1A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	5e-8	57	Vitis vinifera	1621004_at	CF515809	hypothetical protein LOC100243572	-	3e-21	At2g47580	U1A (SPLICEOSOMAL PROTEIN U1A)	C.G.	S.X.	Please select
0.43	1e-108	393	Zea mays	Zm.3121.1.S1_at	AY111018.1	hypothetical protein LOC100277950	-	2e-4	At2g47580	U1A (SPLICEOSOMAL PROTEIN U1A)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage