Gene omics information

Query gene ID	Ta.5437.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	76.8	Ta.5437.1.S1_at	CK204523	-	-	4e-5	At5g23750	remorin family protein	S.X.	H.G.	Please select
0.57	79.2	Ta.12714.2.S1_a_at	CK211871	-	-	1e-3	At4g35480	RHA3B	S.X.	H.G.	Please select
0.55	76.8	TaAffx.110147.1.S1_at	BG905569	-	-	1e+1	At4g37409	unknown protein	S.X.	H.G.	Please select
0.50	72.4	Ta.303.1.S1_at	BG906281	-	-	3e+0	At3g28590	unknown protein	S.X.	H.G.	Please select
0.47	67.9	Ta.303.1.S1_x_at	BG906281	-	-	3e+0	At3g28590	unknown protein	S.X.	H.G.	Please select
0.40	58.4	Ta.8988.1.S1_at	BQ162735	-	-	4e+0	At5g41810	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
52.0	99.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
37.0	99.9	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
23.2	99.8	GSM298058	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
20.3	99.7	GSM298057	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
16.9	99.6	GSM298066	Leaf tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
16.7	99.6	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
16.0	99.6	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
15.2	99.6	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
14.4	99.5	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
11.8	99.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	0	674	Ta.5437.2.A1_at	CA678264	-	-	1e+0	At5g23750	remorin family protein	C.G.	S.X.	Please select
0.39	7e-127	454	Ta.5437.3.S1_a_at	CA677043	-	-	8e-1	At1g37140	MCT1 (mei2 C-Terminal RRM only like 1)	C.G.	S.X.	Please select
0.39	7e-127	454	Ta.5437.3.S1_x_at	CA677043	-	-	8e-1	At1g37140	MCT1 (mei2 C-Terminal RRM only like 1)	C.G.	S.X.	Please select
0.23	6e-41	169	TaAffx.54675.1.S1_at	CA678448	-	-	2e-1	At2g41225	unknown protein	C.G.	S.X.	Please select
0.05	2e-10	67	Ta.5299.1.S1_s_at	BJ273239	-	-	2e-2	At5g23750	remorin family protein	C.G.	S.X.	Please select
0.04	4e-8	59	Ta.27479.1.S1_at	CD453062	-	-	2e-3	At5g23750	remorin family protein	C.G.	S.X.	Please select
0.03	2e-7	57	Ta.7153.1.S1_at	CK199485	-	-	3e-2	At1g18400	BEE1 (BR Enhanced Expression 1)	C.G.	S.X.	Please select
0.03	2e-7	57	Ta.7153.1.S1_x_at	CK199485	-	-	3e-2	At1g18400	BEE1 (BR Enhanced Expression 1)	C.G.	S.X.	Please select
0.04	6e-7	56	Ta.7103.1.A1_at	CK197018	-	-	5e+0	At5g02380	MT2B (METALLOTHIONEIN 2B)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e-5	50	Arabidopsis thaliana	At5g23750	832440	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;OMBFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-2	42	Glycine max	Gma.423.1.S1_at	AI442796	-	-	1e-13	At3g61260	DNA-binding family protein / remorin family protein	C.G.	S.X.	Please select
0.05	7e-2	38	Hordeum vulgare	Contig4861_at	Contig4861	-	-	2e-6	At5g23750	remorin family protein	C.G.	S.X.	Please select
0.34	2e-14	81	Oryza sativa	Os.46647.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	8e-1	36	Populus trichocarpa	Ptp.166.1.S1_s_at	BU808976	-	-	5e-1	At3g48940	remorin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	7e-1	34	Vitis vinifera	1617980_at	CB346475	-	-	8e-1	At5g66800	unknown protein	C.G.	S.X.	Please select
0.10	2e-5	50	Zea mays	Zm.4255.1.S1_at	AY112172.1	-	-	2e+0	At5g23750	remorin family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage