CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.5396.2.S1_a_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 89.1 Ta.5396.2.S1_a_at BJ287380 - - 5e+0 At5g48820 ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) S.X. H.G.
0.60 81.0 Ta.30294.1.S1_at CK201202 - - 1e+0 At5g58970 ATUCP2 (UNCOUPLING PROTEIN 2) S.X. H.G.
0.50 72.4 TaAffx.86707.2.S1_s_at CA613140 - - 1e+1 At4g02970 AT7SL-1 (Arabidopsis 7SL RNA 1) S.X. H.G.
0.40 58.4 Ta.147.1.S1_at M25537.1 agglutinin isolectin D precursor - 2e+0 At5g66040 STR16 (SULFURTRANSFERASE PROTEIN 16) S.X. H.G.
0.40 58.4 Ta.27658.1.S1_at BT009528.1 - - 8e-29 At2g19450 TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1) S.X. H.G.
0.12 13.3 Ta.731.1.S1_at BE516718 - - 1e-1 At4g28170 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
103.5 100.0 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
98.8 100.0 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
88.3 100.0 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
10.5 99.2 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
9.1 99.0 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
7.7 98.7 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.2 98.1 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
5.7 97.9 GSM298071 Crown tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.6 97.8 GSM314258 tissue type: germinating seed, embryo - rep2 GSE12508 Transcription patterns during wheat development
4.5 96.9 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 7e-18 91 TaAffx.86707.1.S1_at CA606921 - - 8e+0 At2g19200 unknown protein C.G. S.X.
0.07 1e-13 77 Ta.2067.1.S1_at CK208414 - - 9e+0 At3g51171 - C.G. S.X.
0.07 6e-12 71 Ta.13371.1.S1_at BQ578676 - - 2e+1 At5g35290 unknown protein C.G. S.X.
0.07 6e-12 71 Ta.13371.2.S1_x_at CA661255 - - 2e+1 At5g35290 unknown protein C.G. S.X.
0.07 6e-12 71 Ta.13371.1.S1_x_at BQ578676 - - 2e+1 At5g35290 unknown protein C.G. S.X.
0.10 6e-9 61 Ta.7698.3.S1_at CA636022 - - 2e+1 At5g60615 - C.G. S.X.
0.09 4e-7 56 Ta.22925.1.S1_at CA714166 - - 1e+0 At1g58684 40S ribosomal protein S2, putative C.G. S.X.
0.10 4e-7 56 Ta.20928.3.S1_at CA636266 - - 4e+0 At5g50050 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.08 4e-7 56 Ta.20928.1.S1_at CA638857 - - 7e+0 At5g55790 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e+0 32 Arabidopsis thaliana At5g48820 834940 ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. Binds to D type and CDC2A cyclins and may inhibit cell cycle. Seven KRP genes were found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.19973.1.S1_at BU926440 - - 1e-2 At5g23950 C2 domain-containing protein C.G. S.X.
0.23 1e-14 79 Hordeum vulgare Contig19508_at Contig19508 - - 1e+0 At1g09250 transcription factor C.G. S.X.
0.06 3e-3 44 Oryza sativa Os01g0124200 AB098712.1 - Bowman Birk trypsin inhibitor 2e+0 At4g00310 EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8) C.G. S.X.
0.03 7e+0 32 Populus trichocarpa PtpAffx.89304.1.A1_at CV229973 global transcription factor group - 1e-3 At5g46030 unknown protein C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1618554_at CF208496 hypothetical protein LOC100254355 - 2e-1 At5g62610 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.03 6e-1 34 Zea mays ZmAffx.1328.1.S1_at 40794996-149 - - 3e+0 At4g17740 C-terminal processing protease, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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