Gene omics information

Query gene ID	Ta.5302.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	87.2	Ta.5302.1.S1_at	BJ285699	-	-	6e-7	At3g03800	SYP131 (SYNTAXIN OF PLANTS 131)	S.X.	H.G.	Please select
0.56	78.6	Ta.5711.3.S1_x_at	CA608831	-	-	5e-7	At1g56423	unknown protein	S.X.	H.G.	Please select
0.52	73.7	TaAffx.49805.1.S1_at	BQ802274	-	-	5e+0	At4g00070	-	S.X.	H.G.	Please select
0.52	73.7	Ta.5418.1.S1_at	CK154298	-	-	5e-17	At1g03950	VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)	S.X.	H.G.	Please select
0.50	72.4	Ta.5711.2.S1_x_at	CD881375	-	-	4e+0	At5g41560	-	S.X.	H.G.	Please select
0.47	67.9	Ta.13978.1.S1_at	BI751890	-	-	1e+0	At5g56350	pyruvate kinase, putative	S.X.	H.G.	Please select
0.46	66.8	Ta.5711.1.S1_at	CA684075	-	-	2e+0	At1g30670	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.40	58.4	Ta.10263.1.S1_a_at	CA703693	-	-	1e-35	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	S.X.	H.G.	Please select
0.38	54.7	Ta.10263.1.S1_at	CA703693	-	-	1e-35	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	S.X.	H.G.	Please select
0.25	32.1	Ta.22715.2.A1_at	CD873981	-	-	3e-12	At2g20840	secretory carrier membrane protein (SCAMP) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.2	99.0	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
8.9	99.0	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
8.1	98.8	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
5.6	97.8	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.8	96.0	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.7	95.8	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.5	95.4	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.4	95.2	GSM138184	genotype C25 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.3	95.0	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2	94.8	GSM250916	TcLr1_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	7e-96	351	TaAffx.7646.1.S1_at	CA654915	-	-	4e+0	At1g01490	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.02	1e-1	38	Ta.3207.1.S1_a_at	BJ230159	-	-	8e-12	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please select
0.02	2e+0	34	TaAffx.25733.1.S1_at	CA696717	-	-	3e+0	At1g05720	selenoprotein family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Ta.13966.2.S1_s_at	CK198271	-	-	2e-1	At5g09750	HEC3 (HECATE 3)	C.G.	S.X.	Please select
0.01	9e+0	32	TaAffx.93492.1.S1_at	BJ313760	-	-	2e+0	At5g07900	mitochondrial transcription termination factor family protein / mTERF family protein	C.G.	S.X.	Please select
0.02	9e+0	32	TaAffx.92161.1.S1_at	CA600587	-	-	1e-1	At3g50550	unknown protein	C.G.	S.X.	Please select
0.02	9e+0	32	TaAffx.85537.2.S1_at	CA625741	-	-	7e-2	At1g64750	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))	C.G.	S.X.	Please select
0.02	9e+0	32	TaAffx.65503.1.A1_at	BJ249491	-	-	6e+0	At5g27860	unknown protein	C.G.	S.X.	Please select
0.02	9e+0	32	Ta.5898.1.S1_at	BJ291698	-	-	2e+1	At4g08878	inorganic phosphate transporter, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	6e-7	56	Arabidopsis thaliana	At3g03800	821141	SYP131 (SYNTAXIN OF PLANTS 131)	member of SYP13 Gene Family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	8e-1	36	Glycine max	GmaAffx.57881.1.S1_at	BI498083	-	-	8e-3	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please select
0.47	2e-165	581	Hordeum vulgare	HVSMEm0005J13r2_at	HVSMEm0005J13r2	-	-	3e-4	At3g03800	SYP131 (SYNTAXIN OF PLANTS 131)	C.G.	S.X.	Please select
0.54	1e-95	351	Oryza sativa	Os06g0168500	AK100316.1	-	Syntaxin-like protein (Fragment)	3e-6	At3g03800	SYP131 (SYNTAXIN OF PLANTS 131)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-7	57	Populus trichocarpa	PtpAffx.58146.1.S1_at	CV261342	hypothetical protein	-	6e-63	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	1e+1	30	Vitis vinifera	1621204_at	CF513600	-	-	3e-1	At5g57860	ubiquitin family protein	C.G.	S.X.	Please select
0.07	9e-1	34	Zea mays	Zm.9852.1.A1_at	BM381073	syntaxin 121	-	5e-3	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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