Gene omics information

Query gene ID	Ta.5228.2.A1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.5228.2.A1_a_at	BJ283864	-	-	2e+1	At5g38050	unknown protein	S.X.	H.G.	Please select
0.59	79.8	Ta.3239.2.A1_a_at	CA641606	-	-	4e+0	At4g09775	-	S.X.	H.G.	Please select
0.57	79.2	Ta.22677.1.S1_at	CA686817	Leucine-rich repeat protein	-	2e-4	At5g21090	leucine-rich repeat protein, putative	S.X.	H.G.	Please select
0.55	76.8	Ta.4059.2.S1_s_at	CA701531	-	-	4e-2	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	S.X.	H.G.	Please select
0.50	72.4	Ta.6327.1.S1_at	CA639936	-	-	1e-2	At5g61530	small G protein family protein / RhoGAP family protein	S.X.	H.G.	Please select
0.50	72.4	Ta.11338.1.S1_at	BQ169872	-	-	3e+0	At4g08593	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.1	98.5	GSM143520	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.6	98.3	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.6	98.3	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.4	98.2	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.0	98.0	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.9	98.0	GSM143509	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.3	97.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1	97.5	GSM143516	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.0	97.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM143503	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	TaAffx.51808.1.S1_at	CA718715	-	-	4e+0	At5g66055	AKRP (ANKYRIN REPEAT PROTEIN)	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.9033.1.S1_at	BQ162796	-	-	2e-6	At5g07910	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.29493.1.A1_at	CA648714	-	-	5e-6	At5g07910	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.86486.1.S1_at	CA607124	-	-	2e-1	At4g22753	SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3)	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.55963.1.S1_at	CA658960	-	-	4e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.114889.2.S1_at	BJ302447	-	-	3e-10	At1g61010	CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I)	C.G.	S.X.	Please select
0.01	4e+0	32	Ta.27350.1.S1_at	CA643165	-	-	2e-1	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	C.G.	S.X.	Please select
0.04	4e+0	32	Ta.18665.1.S1_at	CA640275	-	-	3e+0	At1g03055	unknown protein	C.G.	S.X.	Please select
0.03	2e+1	30	TaAffx.84317.1.S1_at	CA639747	-	-	4e+0	At1g31990	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+1	30	Arabidopsis thaliana	At5g38050	833785	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.82701.1.S1_at	BM308215	-	-	3e+0	At3g29350	AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2)	C.G.	S.X.	Please select
0.82	0	660	Hordeum vulgare	Contig17718_at	Contig17718	-	-	4e+0	At1g13490	unknown protein	C.G.	S.X.	Please select
0.24	1e-48	194	Oryza sativa	Os03g0309000	AK070071.1	-	Conserved hypothetical protein	9e-16	At3g62370	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+1	30	Populus trichocarpa	PtpAffx.54131.1.S1_at	CK094774	-	-	4e+0	At5g64890	PROPEP2 (Elicitor peptide 2 precursor)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	30	Vitis vinifera	1614574_at	CF206733.1	-	-	3e-5	At2g37210	-	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	Zm.15871.2.A1_at	AI668188	hypothetical protein LOC100216742	-	8e-1	At2g04515	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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