Gene omics information

Query gene ID	Ta.5139.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Ta.5139.1.S1_at	BT009575.1	-	-	2e-1	At5g19740	peptidase M28 family protein	S.X.	H.G.	Please select
0.83	93.4	Ta.9132.3.S1_s_at	CA640252	-	-	7e-1	At5g19740	peptidase M28 family protein	S.X.	H.G.	Please select
0.57	79.2	Ta.16216.1.S1_s_at	CA602710	-	-	4e+0	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	S.X.	H.G.	Please select
0.46	66.8	Ta.30706.1.S1_at	AY543532.1	expansin EXPA6	-	8e+0	At2g03090	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	S.X.	H.G.	Please select
0.26	33.6	Ta.22897.1.A1_x_at	CA639939	-	-	3e-1	At3g06750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.22	27.1	Ta.19244.1.S1_a_at	CA649219	-	-	1e+0	At3g59960	ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
89.6	100.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
85.9	100.0	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
16.3	99.6	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
9.8	99.1	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.5	99.1	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.9	99.0	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
7.8	98.7	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
6.9	98.4	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM246390	SB62_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
3.7	95.8	GSM246397	SB57_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	0	1257	Ta.9132.3.S1_s_at	CA640252	-	-	7e-1	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.10	9e-34	145	Ta.9132.2.S1_at	BJ261742	-	-	5e-7	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.14	8e-25	115	Ta.9132.1.A1_at	BQ172025	-	-	4e+0	At5g40850	UPM1 (UROPHORPHYRIN METHYLASE 1)	C.G.	S.X.	Please select
0.13	7e-7	56	Ta.27515.1.S1_at	BT009189.1	-	-	2e-3	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.02	2e-1	38	Ta.30653.1.A1_at	AJ606023.1	hypothetical LOC543043	-	9e-2	At2g33870	ArRABA1h (Arabidopsis Rab GTPase homolog A1h)	C.G.	S.X.	Please select
0.02	2e-1	38	Ta.30653.1.S1_at	AJ606023.1	hypothetical LOC543043	-	9e-2	At2g33870	ArRABA1h (Arabidopsis Rab GTPase homolog A1h)	C.G.	S.X.	Please select
0.02	6e-1	36	TaAffx.85583.1.S1_at	CA623178	-	-	1e+1	At5g47740	-	C.G.	S.X.	Please select
0.02	6e-1	36	TaAffx.64240.1.A1_at	BJ308543	-	-	4e+0	At2g18400	ribosomal protein L6 family protein	C.G.	S.X.	Please select
0.02	6e-1	36	Ta.25927.1.A1_at	CD454513	-	-	5e+0	At2g36916	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	38	Arabidopsis thaliana	At5g19740	832094	peptidase M28 family protein	F:dipeptidase activity;P:proteolysis;C:vacuole;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	HgAffx.9140.1.S1_at	CB379361	-	-	2e-1	At1g66360	C2 domain-containing protein	C.G.	S.X.	Please select
0.55	0	876	Hordeum vulgare	Contig12182_at	Contig12182	-	-	2e+0	At2g45800	LIM domain-containing protein	C.G.	S.X.	Please select
0.19	3e-35	151	Oryza sativa	OsAffx.2326.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e-7	56	Populus trichocarpa	PtpAffx.22300.1.S1_at	CF228629	hypothetical protein	-	5e-7	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	3e+0	32	Vitis vinifera	1621530_at	CF403816	hypothetical protein LOC100241458	-	3e-1	At2g46140	late embryogenesis abundant protein, putative / LEA protein, putative	C.G.	S.X.	Please select
0.12	3e-7	56	Zea mays	Zm.10769.1.A1_at	CF624289	glutamate carboxypeptidase 2	-	2e+0	At2g18890	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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