CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.5046.1.S1_at

Gene name expansin EXPA9

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 Ta.5046.1.S1_at AY543535.1 expansin EXPA9 - 3e-24 At2g37640 EXP3 S.X. H.G.
0.63 83.1 Ta.15929.2.S1_at CA501533 - - 4e-3 At5g59030 COPT1 (copper transporter 1) S.X. H.G.
0.50 72.4 Ta.6350.2.S1_x_at AW448037 calcium-dependent protein kinase - 3e-4 At1g35670 ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) S.X. H.G.
0.50 72.4 Ta.6350.3.S1_a_at BJ235492 calcium-dependent protein kinase /// calcium-dependent protein kinase - 3e-7 At1g35670 ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) S.X. H.G.
0.40 58.4 Ta.6482.1.A1_at BJ276968 - - 4e-8 At3g12060 unknown protein S.X. H.G.
0.31 42.7 Ta.11288.1.S1_s_at BQ842282 - - 1e-1 At4g30380 EXLB2 (EXPANSIN-LIKE B2 PRECURSOR) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
49.7 99.9 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
39.8 99.9 GSM314275 tissue type: pistil, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
34.5 99.9 GSM314276 tissue type: pistil, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
7.5 98.6 GSM314287 tissue type: 22 DAP endosperm - rep1 GSE12508 Transcription patterns during wheat development
7.3 98.6 GSM138153 genotype G32 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.2 98.1 GSM314288 tissue type: 22 DAP endosperm - rep2 GSE12508 Transcription patterns during wheat development
4.8 97.2 GSM138160 genotype A91 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.6 97.0 GSM138211 genotype B65 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.5 96.9 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
4.5 96.9 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 5e-38 159 Ta.5567.1.S1_at AY543529.1 expansin EXPA3 - 3e-18 At2g37640 EXP3 C.G. S.X.
0.33 3e-36 153 Ta.24760.1.S1_at AY485121.1 - - 6e-11 At2g37640 EXP3 C.G. S.X.
0.34 2e-34 147 Ta.1400.2.S1_a_at BQ839416 - - 1e-3 At1g69530 ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) C.G. S.X.
0.12 7e-19 95 Ta.30773.1.S1_at AY543531.1 expansin EXPA5 - 7e-4 At2g40610 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) C.G. S.X.
0.12 1e-14 81 Ta.1400.3.S1_a_at CA731495 - - 1e+0 At1g26770 ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10) C.G. S.X.
0.07 1e-11 71 Ta.8296.1.S1_at AY543533.1 expansin EXPA7 - 2e-1 At1g62333 unknown protein C.G. S.X.
0.13 1e-11 71 Ta.21031.1.S1_at AY543530.1 - - 4e-5 At2g39700 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) C.G. S.X.
0.07 6e-10 65 TaAffx.111333.1.S1_at CA643077 Alpha-expansin EXPA1 - 9e-1 At5g08040 TOM5 (MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG) C.G. S.X.
0.12 6e-10 65 Ta.30706.1.S1_at AY543532.1 expansin EXPA6 - 8e+0 At2g03090 ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 3e-24 113 Arabidopsis thaliana At2g37640 818341 EXP3 member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. - - - C.G. S.X.
0.35 4e-30 133 Glycine max Gma.7006.1.S1_at AF516880.1 expansin - 6e-26 At3g55500 ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) C.G. S.X.
0.36 1e-37 157 Hordeum vulgare Contig3675_at Contig3675 - - 2e-10 At3g55500 ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) C.G. S.X.
0.35 4e-28 127 Oryza sativa Os01g0823100 U30477.1 - Alpha-expansin OsEXPA2 5e-5 At1g69530 ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) C.G. S.X.
0.12 5e-11 69 Populus trichocarpa PtpAffx.17914.2.A1_a_at CV257560 hypothetical protein - 3e-51 At2g28950 ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) C.G. S.X.
0.31 5e-23 107 Vitis vinifera 1608191_at CD798831 hypothetical protein LOC100245911 - 4e-20 At2g39700 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) C.G. S.X.
0.59 0 827 Zea mays Zm.13728.2.S1_at AY106266.1 - - 1e-14 At3g55500 ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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