Gene omics information

Query gene ID	Ta.5023.2.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	89.8	Ta.5023.2.A1_at	BJ311223	-	-	1e+0	At5g05090	myb family transcription factor	S.X.	H.G.	Please select
0.57	79.2	TaAffx.81077.1.S1_s_at	CA732020	-	-	5e-3	At3g20900	unknown protein	S.X.	H.G.	Please select
0.50	72.4	TaAffx.7591.1.S1_at	CA656091	-	-	2e+1	Atmg01020	-	S.X.	H.G.	Please select
0.44	64.5	Ta.15206.1.S1_at	CA693469	-	-	3e-1	At2g22320	unknown protein	S.X.	H.G.	Please select
0.43	62.2	TaAffx.105893.1.S1_x_at	CA728292	-	-	3e-1	At1g74890	ARR15 (RESPONSE REGULATOR 15)	S.X.	H.G.	Please select
0.38	54.7	TaAffx.36684.1.A1_at	BJ319782	-	-	2e-1	At5g14690	unknown protein	S.X.	H.G.	Please select
0.30	40.9	TaAffx.38217.1.S1_at	BJ244494	-	-	7e+0	At5g11690	ATTIM17-3	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.1	99.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
19.1	99.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
18.0	99.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
17.2	99.6	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
15.9	99.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
13.8	99.5	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	1e-43	176	Ta.11163.1.A1_at	BQ169537	-	-	1e+0	At5g50423	-	C.G.	S.X.	Please select
0.23	2e-36	153	TaAffx.57350.1.S1_at	CA631020	-	-	1e+0	At2g46530	ARF11 (AUXIN RESPONSE FACTOR 11)	C.G.	S.X.	Please select
0.18	5e-12	71	Ta.9126.1.A1_at	BJ323019	-	-	3e-1	At4g18501	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	38	Ta.9120.1.S1_a_at	BQ166581	-	-	6e-11	At2g27900	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	TaAffx.124108.1.S1_at	BJ302625	-	-	1e-1	At5g25220	KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)	C.G.	S.X.	Please select
0.04	4e+0	32	TaAffx.77636.1.S1_at	CA744998	-	-	7e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.15432.1.A1_at	BQ169131	-	-	1e-2	At1g80610	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	TaAffx.10772.1.A1_s_at	CK213044	-	-	6e+0	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.02	4e+0	32	TaAffx.10772.1.A1_at	CK213044	-	-	6e+0	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g05090	830391	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.C77000017_at	PsAffx.C77000017	-	-	3e-1	At3g63400	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HY03E24u_at	HY03E24u	-	-	2e+0	At4g26720	PPX1 (PROTEIN PHOSPHATASE X 1)	C.G.	S.X.	Please select
0.10	1e-11	71	Oryza sativa	Os08g0114100	AK099560.1	-	Conserved hypothetical protein	4e-27	At1g64680	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.58692.1.A1_at	CK094700	-	-	1e+1	At3g13672	seven in absentia (SINA) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	32	Vitis vinifera	1614045_at	CF604589	hypothetical protein LOC100267863	-	8e-11	At4g36220	FAH1 (FERULIC ACID 5-HYDROXYLASE 1)	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	Zm.19110.1.A1_at	CO533591	hypothetical protein LOC100217228	-	1e+1	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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