CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.4999.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.3 Ta.4999.1.S1_at BJ270254 - - 8e+0 At5g22440 60S ribosomal protein L10A (RPL10aC) S.X. H.G.
0.50 72.4 Ta.9006.1.S1_at BQ162762 - - 7e+0 At5g15840 CO (CONSTANS) S.X. H.G.
0.50 72.4 Ta.27940.1.A1_s_at BQ169626 - - 1e+0 At1g01380 ETC1 (ENHANCER OF TRY AND CPC 1) S.X. H.G.
0.40 58.4 Ta.5909.3.A1_x_at BJ298528 - - 7e+0 At4g27350 unknown protein S.X. H.G.
0.40 58.4 TaAffx.76554.1.A1_at BJ307578 - - 1e+0 At5g54320 unknown protein S.X. H.G.
0.40 58.4 Ta.11311.1.A1_at BQ169821 - - 5e+0 At4g00940 Dof-type zinc finger domain-containing protein S.X. H.G.
0.35 49.8 TaAffx.12303.1.S1_at CD938363 - - 1e-1 At4g37240 unknown protein S.X. H.G.
0.33 46.9 Ta.3543.1.A1_at BJ220370 - - 3e-1 At2g17785 zinc-binding protein-related S.X. H.G.
0.33 46.9 Ta.7410.1.S1_x_at CD871853 - - 2e-4 At1g14970 unknown protein S.X. H.G.
0.25 32.1 TaAffx.29625.1.S1_at CA638741 - - 8e+0 At4g24026 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.8 97.9 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development
5.7 97.9 GSM139929 Anther immature pollen rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.0 97.4 GSM139917 Anther leptotene-pachytene rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.9 97.3 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8 97.2 GSM139928 Anther immature pollen rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.7 97.1 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.3 96.7 GSM298087 Crown tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.2 96.6 GSM314270 tissue type: immature inflorescence - rep2 GSE12508 Transcription patterns during wheat development
4.0 96.3 GSM314271 tissue type: immature inflorescence - rep3 GSE12508 Transcription patterns during wheat development
3.8 96.0 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 3e-30 133 TaAffx.83090.1.S1_at CA662164 - - 2e+1 Atmg00516 - C.G. S.X.
0.09 4e-26 119 TaAffx.51157.1.S1_at CA730210 - - 3e-1 At1g02560 CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5) C.G. S.X.
0.08 6e-19 95 Ta.14314.1.A1_at BU099750 - - 4e-1 At2g44340 VQ motif-containing protein C.G. S.X.
0.05 1e-17 91 Ta.4416.1.S1_at CD909308 - - 2e-41 At5g20010 RAN-1 C.G. S.X.
0.08 2e-16 87 TaAffx.28969.1.S1_at CA653421 - - 4e+0 At1g55045 unknown protein C.G. S.X.
0.06 2e-6 54 Ta.24786.1.S1_a_at BQ162779 - - 5e-1 At1g69540 AGL94 (AGAMOUS-LIKE 94) C.G. S.X.
0.03 1e-1 38 TaAffx.114085.1.S1_at CA599006 - - 2e-11 At1g01200 ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) C.G. S.X.
0.03 1e-1 38 Ta.27972.1.S1_at CD922025 - - 1e+0 At2g20160 MEO (MEIDOS) C.G. S.X.
0.02 1e-1 38 Ta.25459.1.S1_at BJ215093 - - 3e-21 At4g09720 Ras-related GTP-binding protein, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e+0 32 Arabidopsis thaliana At5g22440 832305 60S ribosomal protein L10A (RPL10aC) F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus;BOMPAF - - - C.G. S.X.
0.05 3e-9 63 Glycine max PsAffx.CL157Contig1_at PsAffx.CL157Contig1 - - 2e-3 At5g55190 RAN3 (RAN GTPASE 3) C.G. S.X.
0.06 1e-21 103 Hordeum vulgare Contig11318_at Contig11318 - - 7e-40 At5g20020 RAN2 C.G. S.X.
0.05 2e-11 71 Oryza sativa Os.49850.1.S1_at - - - 0 C.G. S.X.
0.03 2e-1 38 Populus trichocarpa PtpAffx.141217.1.A1_at CV227818 hypothetical protein - 9e-8 At2g20100 ethylene-responsive family protein C.G. S.X.
0.03 9e-3 40 Vitis vinifera 1612327_s_at CB346389 - - 3e+0 At1g50290 unknown protein C.G. S.X.
0.04 2e-1 36 Zea mays Zm.4392.2.A1_a_at AW787551 Ran-related GTP binding protein - 3e-63 At5g20020 RAN2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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