Gene omics information

Query gene ID	Ta.494.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.1	Ta.494.1.S1_at	CK155824	-	-	5e-30	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	S.X.	H.G.	Please select
0.91	98.2	Ta.7649.3.A1_a_at	BQ161111	-	-	6e-3	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	S.X.	H.G.	Please select
0.83	93.4	Ta.7649.1.S1_x_at	BJ242983	-	-	2e-4	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	S.X.	H.G.	Please select
0.80	92.2	Ta.7649.3.A1_at	BQ161111	-	-	6e-3	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	S.X.	H.G.	Please select
0.80	92.2	Ta.7649.2.S1_x_at	BJ321934	-	-	8e-5	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	S.X.	H.G.	Please select
0.73	89.1	Ta.7649.1.S1_at	BJ242983	-	-	2e-4	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.8	99.7	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
16.6	99.6	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
12.4	99.4	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
11.9	99.4	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
11.0	99.3	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.9	99.1	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.0	98.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0	98.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-20	101	TaAffx.111949.2.S1_at	CA634982	-	-	1e+0	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.01	2e-1	38	TaAffx.110211.1.S1_at	CA662106	-	-	1e-1	At2g22080	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	36	TaAffx.51013.1.S1_at	BQ168594	-	-	6e+0	At5g26890	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	36	TaAffx.111855.1.S1_at	CA631978	-	-	1e+0	At5g61412	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.9577.2.S1_at	CA696477	-	-	1e+0	At4g10265	wound-responsive protein, putative	C.G.	S.X.	Please select
0.01	3e+0	34	TaAffx.96188.1.S1_at	CK213940	-	-	3e+1	At5g37900	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.87004.1.S1_at	CA597426	-	-	4e-3	At1g01170	ozone-responsive stress-related protein, putative	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.5240.1.S1_at	CA718094	-	-	1e+1	At4g38495	-	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.43147.1.A1_at	CA721949	-	-	4e+0	At3g59330	anthocyanin-related membrane protein family	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	5e-30	133	Arabidopsis thaliana	At1g02560	839433	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	1e-25	119	Glycine max	Gma.1376.1.S1_at	CD403410	-	-	8e-133	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	C.G.	S.X.	Please select
0.67	0	1406	Hordeum vulgare	Contig5003_at	Contig5003	-	-	5e-54	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	C.G.	S.X.	Please select
0.47	0	698	Oryza sativa	Os03g0308100	AK105977.1	-	Peptidase S14, ClpP family protein	5e-60	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	9e-17	89	Populus trichocarpa	PtpAffx.202380.1.S1_s_at	pmrna4781	hypothetical protein	-	1e-159	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	8e-26	117	Vitis vinifera	1613223_at	CB341689	hypothetical protein LOC100246849	-	2e-121	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	C.G.	S.X.	Please select
0.46	3e-177	621	Zea mays	Zm.5146.1.S1_a_at	CF057534	hypothetical protein LOC100194286	-	2e-68	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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