Gene omics information

Query gene ID	Ta.4932.3.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	74.9	Ta.4932.3.S1_x_at	BJ319726	-	-	4e-28	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	S.X.	H.G.	Please select
0.73	89.1	TaAffx.84352.1.S1_at	CA638782	-	-	5e-43	At3g61650	TUBG1 (GAMMA-TUBULIN)	S.X.	H.G.	Please select
0.61	82.0	Ta.9770.1.S1_at	BJ230730	-	-	6e+0	At5g19940	plastid-lipid associated protein PAP-related / fibrillin-related	S.X.	H.G.	Please select
0.50	72.4	Ta.4932.1.A1_a_at	BJ274109	-	-	8e-2	At1g12890	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.40	58.4	Ta.22929.1.S1_at	CA702369	-	-	8e-2	At5g27740	EMB2775 (EMBRYO DEFECTIVE 2775)	S.X.	H.G.	Please select
0.23	29.0	Ta.7040.1.S1_at	BJ314304	-	-	1e-4	At5g14600	tRNA (adenine-N1-)-methyltransferase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.4	98.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.9	98.4	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM298060	Crown tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.2	98.1	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.7	97.9	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.1	97.5	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	8e-156	549	Ta.4932.2.S1_a_at	CD883564	-	-	7e-32	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	C.G.	S.X.	Please select
0.39	6e-135	480	Ta.4932.1.A1_at	BJ274109	-	-	8e-2	At1g12890	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.39	6e-135	480	Ta.4932.1.A1_a_at	BJ274109	-	-	8e-2	At1g12890	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.39	6e-135	480	Ta.4932.1.A1_x_at	BJ274109	-	-	8e-2	At1g12890	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.39	6e-135	480	Ta.4932.1.A1_s_at	BJ274109	-	-	8e-2	At1g12890	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.21	1e-55	216	Ta.28832.1.S1_x_at	BM135721	-	-	3e-17	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	C.G.	S.X.	Please select
0.21	1e-55	216	Ta.28832.1.S1_at	BM135721	-	-	3e-17	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	C.G.	S.X.	Please select
0.03	3e-1	36	Ta.25139.1.S1_at	CA615602	-	-	7e+0	At5g17150	-	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.30931.1.S1_at	CN011937	-	-	5e-1	At3g23930	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	4e-28	125	Arabidopsis thaliana	At5g22330	832293	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	F:protein binding;P:defense response to fungus, incompatible interaction, meristem development;C:nucleolus, nucleus, chloroplast;BOMFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	4e-7	56	Glycine max	GmaAffx.41781.1.A1_at	BU547221	-	-	6e-46	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	C.G.	S.X.	Please select
0.44	1e-165	581	Hordeum vulgare	Contig9065_at	Contig9065	-	-	4e-77	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	C.G.	S.X.	Please select
0.31	4e-116	418	Oryza sativa	Os.38033.3.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	3e-17	89	Populus trichocarpa	Ptp.4245.1.S1_at	CK091861	hypothetical protein	-	1e-63	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	1e-6	52	Vitis vinifera	1621090_at	CB978759	hypothetical protein LOC100262179	-	3e-30	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.220.1.A1_at	AI670228	-	-	3e+0	At4g14890	ferredoxin family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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