Gene omics information

Query gene ID	Ta.488.3.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	Ta.488.3.S1_at	CA627364	-	-	4e-3	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	S.X.	H.G.	Please select
0.83	93.4	Ta.488.1.S1_at	BG909285	-	-	3e+0	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	S.X.	H.G.	Please select
0.83	93.4	Ta.488.1.S1_x_at	BG909285	-	-	3e+0	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	S.X.	H.G.	Please select
0.67	86.3	Ta.488.3.S1_a_at	CA627364	-	-	4e-3	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	S.X.	H.G.	Please select
0.43	62.2	Ta.2402.1.S1_a_at	CA722522	-	-	7e-12	At3g54890	LHCA1	S.X.	H.G.	Please select
0.43	62.2	Ta.2392.1.S1_x_at	CA623973	-	-	2e+0	At3g07450	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.3	98.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.1	98.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.0	98.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.0	98.8	GSM314266	tissue type: seedling, leaf - rep1	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1	98.1	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM298080	Leaf tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM298053	Leaf tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.93	0	920	Ta.488.3.S1_a_at	CA627364	-	-	4e-3	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	C.G.	S.X.	Please select
0.40	4e-167	587	Ta.488.1.S1_at	BG909285	-	-	3e+0	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	C.G.	S.X.	Please select
0.40	4e-167	587	Ta.488.1.S1_x_at	BG909285	-	-	3e+0	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	C.G.	S.X.	Please select
0.01	4e+0	32	TaAffx.88477.1.S1_at	BJ287496	-	-	9e-10	At1g77470	replication factor C 36 kDA, putative	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.80486.1.S1_at	CA696323	-	-	1e+0	At5g66815	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	TaAffx.106861.1.S1_at	CA653897	-	-	2e+1	At5g41440	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Ta.7720.1.S1_a_at	AJ612921	-	-	1e-56	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please select
0.03	4e+0	32	Ta.29565.2.S1_at	BJ313376	-	-	1e+0	At4g29760	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Ta.22964.1.S1_a_at	AY074784.1	dehydroascorbate reductase	-	2e-1	At1g75270	DHAR2 (DEHYDROASCORBATE REDUCTASE 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	4e-3	42	Arabidopsis thaliana	At4g09010	826480	APX4 (ASCORBATE PEROXIDASE 4)	Encodes a microsomal ascorbate peroxidase APX4. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e-1	38	Glycine max	Gma.2202.1.S1_at	CD404038	-	-	1e-30	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	C.G.	S.X.	Please select
0.64	8e-148	521	Hordeum vulgare	Contig8515_s_at	Contig8515	-	-	8e-2	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	C.G.	S.X.	Please select
0.29	2e-37	157	Oryza sativa	Os04g0602100	AK121197.1	-	Haem peroxidase, plant/fungal/bacterial familyprotein	2e-10	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.217816.1.S1_at	pmrna33230	hypothetical protein	-	3e-3	At5g50700	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	2e-2	38	Vitis vinifera	1618209_at	CF373021	-	-	3e-17	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	C.G.	S.X.	Please select
0.02	7e+0	30	Zea mays	Zm.7097.2.A1_a_at	CF019338	hypothetical protein LOC100273341 /// 40S ribosomal protein S18	-	2e-27	At1g22780	PFL (POINTED FIRST LEAVES)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage