Gene omics information

Query gene ID	Ta.4468.1.S1_at
Gene name	Cop8
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.4468.1.S1_at	CK214137	Cop8	-	4e-52	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	S.X.	H.G.	Please select
0.61	82.0	Ta.9932.2.S1_a_at	CD877347	-	-	5e-1	At5g19180	ECR1 (E1 C-terminal related 1)	S.X.	H.G.	Please select
0.60	81.0	Ta.18139.1.A1_a_at	BJ308447	-	-	4e+0	At5g26220	ChaC-like family protein	S.X.	H.G.	Please select
0.55	76.8	Ta.9455.1.S1_at	CK216399	-	-	5e-23	At1g11890	SEC22	S.X.	H.G.	Please select
0.53	74.9	Ta.23173.1.S1_at	BT009521.1	-	-	6e-29	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	S.X.	H.G.	Please select
0.50	72.4	Ta.12123.1.S1_a_at	BQ171638	-	-	7e-32	At5g56280	CSN6A	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	98.5	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.1	98.1	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.8	97.9	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.7	97.9	GSM139929	Anther immature pollen rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.2	97.5	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.9	97.3	GSM139920	Anther diplotene-anaphaseI rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.8	97.2	GSM139916	Anther leptotene-pachytene rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.7	97.1	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.5	96.9	GSM139912	Anther pre-meiosis rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.5	96.9	GSM139919	Anther diplotene-anaphaseI rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	3e-62	240	TaAffx.112097.1.S1_at	CA627100	-	-	1e-18	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	C.G.	S.X.	Please select
0.02	9e-1	36	TaAffx.30130.1.S1_at	CA628092	-	-	9e-1	At5g63135	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	36	TaAffx.30130.1.S1_x_at	CA628092	-	-	9e-1	At5g63135	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	36	TaAffx.288.1.A1_at	BQ169162	-	-	4e-1	At5g66815	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	36	Ta.4879.1.S1_x_at	AL829354	-	-	5e-1	At4g30090	emb1353 (embryo defective 1353)	C.G.	S.X.	Please select
0.02	9e-1	36	Ta.24027.1.A1_x_at	CA722568	-	-	1e+0	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	C.G.	S.X.	Please select
0.01	9e-1	36	Ta.10893.1.S1_at	CA678943	-	-	7e-1	At5g28610	-	C.G.	S.X.	Please select
0.01	4e+0	34	TaAffx.12769.1.S1_at	BJ236073	-	-	4e+0	At5g16880	VHS domain-containing protein / GAT domain-containing protein	C.G.	S.X.	Please select
0.01	4e+0	34	TaAffx.120510.1.S1_at	BJ225140	-	-	1e+0	At3g53100	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	4e-52	206	Arabidopsis thaliana	At5g42970	834312	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	encodes subunit 4 of COP9 signalosome complex. sequence is similar to a subunit of the 19S regulatory particle of the 26S proteasome. recessive mutation causes derepression of photomorphogenesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.26	3e-35	151	Glycine max	Gma.2752.1.S1_at	AW569178	-	-	4e-26	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	C.G.	S.X.	Please select
0.28	6e-139	494	Hordeum vulgare	Contig6035_s_at	Contig6035	-	-	8e-5	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	C.G.	S.X.	Please select
0.64	0	765	Oryza sativa	Os03g0197400	AK071413.1	-	COP8 (Constitutive photomorphogenic) homolog (CSNcomplex subunit 4)	1e-55	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	3e-41	171	Populus trichocarpa	Ptp.4256.1.S1_s_at	CK091095	-	-	2e-69	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	2e-26	119	Vitis vinifera	1616080_at	CF511120	hypothetical protein LOC100254062	-	5e-13	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	C.G.	S.X.	Please select
0.59	1e-179	628	Zea mays	Zm.6611.1.A1_at	AW076483	hypothetical protein LOC100192688	-	1e-18	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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