CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.4447.2.S1_x_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 Ta.4447.2.S1_x_at CA607764 - - 2e-25 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) S.X. H.G.
0.73 89.1 Ta.28561.1.S1_at CK197498 - - 2e-22 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) S.X. H.G.
0.71 88.0 Ta.1942.1.S1_x_at CD887139 - - 2e-1 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) S.X. H.G.
0.71 88.0 Ta.4447.1.S1_at BJ260861 - - 1e-49 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) S.X. H.G.
0.53 74.9 Ta.1942.1.S1_at CD887139 - - 2e-1 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) S.X. H.G.
0.48 69.0 Ta.27649.1.S1_at AB158407.1 CesA protein - 2e-80 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.8 96.0 GSM138163 genotype E5 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8 96.0 GSM111227 genotype F48 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.4 95.2 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
3.2 94.8 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.1 94.5 GSM111226 genotype F48 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.1 94.5 GSM111185 genotype C22 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.1 94.5 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.0 94.3 GSM138194 genotype J15 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.0 94.3 GSM111197 genotype J15 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.9 94.0 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 0 1031 Ta.4447.1.S1_at BJ260861 - - 1e-49 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) C.G. S.X.
0.54 0 1031 Ta.4447.1.S1_x_at BJ260861 - - 1e-49 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) C.G. S.X.
0.62 0 854 Ta.28561.1.S1_at CK197498 - - 2e-22 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) C.G. S.X.
0.37 2e-53 210 Ta.5571.1.S1_at CA626078 - - 2e-6 At5g44030 CESA4 (CELLULOSE SYNTHASE A4) C.G. S.X.
0.24 4e-45 182 Ta.10214.1.S1_at BJ250123 - - 4e-14 At5g17420 IRX3 (IRREGULAR XYLEM 3) C.G. S.X.
0.30 8e-31 135 TaAffx.86606.1.S1_at CA604674 - - 4e-9 At5g17420 IRX3 (IRREGULAR XYLEM 3) C.G. S.X.
0.13 7e-25 115 Ta.27649.1.S1_at AB158407.1 CesA protein - 2e-80 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) C.G. S.X.
0.08 1e-23 111 Ta.6466.1.S1_at BE431148 - - 1e-29 At5g09870 CESA5 (CELLULOSE SYNTHASE 5) C.G. S.X.
0.16 1e-17 91 Ta.4321.1.A1_at CK165915 - - 6e-30 At4g18780 IRX1 (IRREGULAR XYLEM 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-25 117 Arabidopsis thaliana At4g32410 829376 CESA1 (CELLULOSE SYNTHASE 1) Encodes a cellulose synthase isomer. CESA1 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA1, along with CESA3 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. lasma membrane complex for cellulose biosynthesis. - - - C.G. S.X.
0.23 9e-16 85 Glycine max Gma.11314.1.S1_at BU548544 - - 2e-33 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) C.G. S.X.
0.56 0 1049 Hordeum vulgare Contig4452_at Contig4452 CesA6 protein - 7e-51 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) C.G. S.X.
0.23 2e-159 563 Oryza sativa Os05g0176100 AK067850.1 - Cellulose synthase-1 3e-82 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) C.G. S.X.
0.18 8e-10 65 Populus trichocarpa Ptp.3087.1.S1_at AJ778410 cellulose synthase - 3e-122 At5g17420 IRX3 (IRREGULAR XYLEM 3) C.G. S.X.
0.37 2e-44 178 Vitis vinifera 1611671_at CF602815 hypothetical protein LOC100254408 - 2e-127 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) C.G. S.X.
0.25 7e-97 353 Zea mays Zm.519.1.S1_at AI065908 cellulose synthase3 - 2e-113 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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