CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.424.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.32 44.4 Ta.424.1.S1_at CA644335 - - 5e+0 At4g02370 unknown protein S.X. H.G.
0.83 93.4 Ta.11016.1.S1_at BQ168385 - - 2e+0 At2g27030 CAM5 (CALMODULIN 5) S.X. H.G.
0.73 89.1 TaAffx.26308.1.S1_at CA690131 - - 6e-2 At5g28610 - S.X. H.G.
0.73 89.1 Ta.8512.2.S1_x_at BQ281568 - - 5e+0 At2g28190 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) S.X. H.G.
0.67 86.3 TaAffx.54566.1.S1_s_at CA679969 - - 8e-1 At2g27030 CAM5 (CALMODULIN 5) S.X. H.G.
0.50 72.4 Ta.8512.1.S1_at BQ162001 - - 7e+0 At2g28190 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.7 99.5 GSM143521 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
12.5 99.4 GSM143523 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
12.1 99.4 GSM143518 Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
12.0 99.4 GSM143515 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
10.6 99.2 GSM143522 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
10.6 99.2 GSM143509 Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
10.6 99.2 GSM138153 genotype G32 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
9.6 99.1 GSM324488 Si- B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.5 99.1 GSM138149 genotype F29 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
9.5 99.1 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.56 2e-92 339 Ta.29984.1.S1_at CK199685 - - 6e+0 At5g63540 unknown protein C.G. S.X.
0.69 2e-82 305 Ta.8361.1.S1_a_at CA597344 - - 1e+0 At5g49600 unknown protein C.G. S.X.
0.43 2e-54 212 Ta.8361.3.S1_x_at CA677646 - - 7e-1 At5g49600 unknown protein C.G. S.X.
0.04 3e-4 46 TaAffx.107392.1.S1_at CA700494 - - 1e+0 At5g27440 unknown protein C.G. S.X.
0.03 5e-3 42 TaAffx.12440.1.S1_at CA735184 - - 6e-7 At1g62850 - C.G. S.X.
0.01 8e-2 38 Ta.234.1.S1_at AF015523.1 low-affinity cation transporter - 6e-2 At5g56840 DNA-binding family protein C.G. S.X.
0.03 3e-1 36 TaAffx.38572.1.A1_at BJ308742 - - 4e+0 At5g43640 40S ribosomal protein S15 (RPS15E) C.G. S.X.
0.02 3e-1 36 Ta.9347.3.S1_at BQ162095 - - 3e+0 At4g18335 unknown protein C.G. S.X.
0.03 3e-1 36 Ta.9347.2.A1_x_at CK215681 - - 1e+0 At2g28671 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 32 Arabidopsis thaliana At4g02370 828057 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane, vacuole;PO - - - C.G. S.X.
0.03 2e+0 34 Glycine max Gma.11672.1.S1_at BF425929 - - 2e-1 At3g53670 unknown protein C.G. S.X.
0.45 1e-72 272 Hordeum vulgare Contig12523_s_at Contig12523 - - 3e+0 At3g11580 DNA-binding protein, putative C.G. S.X.
0.12 2e-7 57 Oryza sativa Os05g0180901 9633.m00785 - - 6e+0 At5g16840 BPA1 (BINDINGPARTNEROFACD11 1) C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.212974.1.S1_s_at pmrna25380 ZIP transporter /// ZIP transporter /// ZIP transporter - 2e-12 At1g31260 ZIP10 (ZINC TRANSPORTER 10 PRECURSOR) C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1608576_at CF517202 hypothetical protein LOC100248637 - 4e+0 At5g53310 myosin heavy chain-related C.G. S.X.
0.05 5e-1 34 Zea mays Zm.9297.1.A1_at CD998185 hypothetical protein LOC100275777 - 1e+0 At1g47770 beta-galactosidase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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