CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.407.1.A1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.62 82.3 Ta.407.1.A1_at BQ172136 - - 1e-1 At3g01740 - S.X. H.G.
0.85 93.8 Ta.4321.1.A1_at CK165915 - - 6e-30 At4g18780 IRX1 (IRREGULAR XYLEM 1) S.X. H.G.
0.83 93.4 Ta.5571.1.S1_at CA626078 - - 2e-6 At5g44030 CESA4 (CELLULOSE SYNTHASE A4) S.X. H.G.
0.81 92.4 TaAffx.29139.1.S1_at CA649626 - - 3e+0 At3g28070 nodulin MtN21 family protein S.X. H.G.
0.81 92.4 Ta.10214.1.S1_at BJ250123 - - 4e-14 At5g17420 IRX3 (IRREGULAR XYLEM 3) S.X. H.G.
0.79 91.3 Ta.11861.1.A1_at BQ170945 - - 9e+0 At2g10557 unknown protein S.X. H.G.
0.79 91.3 Ta.21772.1.A1_at CK208240 - - 3e-1 At4g19390 - S.X. H.G.
0.77 90.8 TaAffx.77683.1.S1_x_at CA744183 - - 8e+0 At3g13800 metallo-beta-lactamase family protein S.X. H.G.
0.76 90.1 Ta.9926.2.S1_at BJ259760 - - 4e-1 At5g32440 - S.X. H.G.
0.74 89.4 TaAffx.77683.1.S1_at CA744183 - - 8e+0 At3g13800 metallo-beta-lactamase family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.4 99.9 GSM246395 SB69_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
25.3 99.8 GSM246388 SB10_Stem_ rep1_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
23.2 99.8 GSM246399 SB3_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
21.4 99.7 GSM246394 SB69_Stem_ rep1_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
21.3 99.7 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
19.4 99.7 GSM246397 SB57_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
18.8 99.7 GSM246389 SB10_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
14.7 99.5 GSM314272 tissue type: floral bracts, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
14.1 99.5 GSM246398 SB3_Stem_ rep1_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
13.9 99.5 GSM246396 SB57_Stem_ rep1_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 38 Ta.6489.1.S1_at CD889567 - - 1e-9 At5g57970 methyladenine glycosylase family protein C.G. S.X.
0.02 4e-1 36 Ta.5598.1.S1_at CK217285 - - 5e+0 At5g51880 iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors C.G. S.X.
0.03 2e+0 34 TaAffx.65098.1.A1_at BJ261912 - - 1e+0 At3g59052 CPuORF18 (Conserved peptide upstream open reading frame 18) C.G. S.X.
0.02 2e+0 34 TaAffx.30877.1.S1_at CA621434 - - 1e+0 At3g53410 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e+0 34 TaAffx.25425.1.S1_at CA700239 - - 6e-2 At5g42630 ATS (ABERRANT TESTA SHAPE) C.G. S.X.
0.02 2e+0 34 TaAffx.128541.19.S1_x_at CA615465 - - 4e+0 At5g08760 unknown protein C.G. S.X.
0.02 2e+0 34 Ta.3478.3.S1_x_at CA637826 - - 2e-11 At1g69670 CUL3B (CULLIN 3B) C.G. S.X.
0.01 2e+0 34 Ta.3478.1.S1_at CK157046 - - 2e-27 At1g26830 ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) C.G. S.X.
0.02 2e+0 34 Ta.3478.2.S1_a_at CA648423 - - 9e-20 At1g26830 ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Arabidopsis thaliana At3g01740 821088 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO - - - C.G. S.X.
0.03 6e-1 36 Glycine max GmaAffx.50978.1.S1_at BM307533 - - 3e+0 At2g05600 - C.G. S.X.
0.52 7e-97 353 Hordeum vulgare Contig16335_at Contig16335 - - 3e+0 At3g22961 - C.G. S.X.
0.38 2e-87 323 Oryza sativa Os08g0489300 AK104597.1 - DNA-3-methyladenine glycosidase I-like protein 8e-1 At3g25650 ASK15 (ARABIDOPSIS SKP1-LIKE 15) C.G. S.X.
0.03 1e-1 38 Populus trichocarpa PtpAffx.32736.1.S1_at CK093138 - - 6e-2 At4g33100 - C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1607177_at CF209002 - - 1e+1 At5g50680 SAE1B (SUMO ACTIVATING ENZYME 1B) C.G. S.X.
0.40 2e-41 169 Zea mays Zm.2349.1.A1_at AW355959 GMP synthase - 2e+0 At1g75550 glycine-rich protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage