CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.4062.1.S1_x_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.40 58.4 Ta.4062.1.S1_x_at CA703978 - - 2e-1 At4g38420 sks9 (SKU5 Similar 9) S.X. H.G.
0.52 73.7 Ta.214.2.A1_at BJ231272 - - 1e-131 At5g12250 TUB6 (BETA-6 TUBULIN) S.X. H.G.
0.50 72.4 Ta.1305.1.S1_x_at CK154793 - - 2e-65 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) S.X. H.G.
0.50 72.4 Ta.1305.1.S1_a_at CK154793 - - 2e-65 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) S.X. H.G.
0.48 69.0 Ta.214.2.A1_x_at BJ231272 - - 1e-131 At5g12250 TUB6 (BETA-6 TUBULIN) S.X. H.G.
0.44 64.5 Ta.28022.2.A1_at BJ309684 - - 1e-47 At5g12250 TUB6 (BETA-6 TUBULIN) S.X. H.G.
0.40 58.4 Ta.9534.1.A1_at BQ161680 - - 5e-11 At3g15380 choline transporter-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.3 97.6 GSM139915 Anther pre-meiosis rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.5 96.9 GSM139927 Anther tetrads rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.1 96.4 GSM111177 genotype E5 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
4.0 96.3 GSM111242 genotype C10 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.4 95.2 GSM138215 genotype A77 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2 94.8 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2 94.8 GSM138165 genotype D15 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2 94.8 GSM138163 genotype E5 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.1 94.5 GSM138202 genotype F44 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.1 94.5 GSM138203 genotype F44 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.94 0 1713 Ta.4062.1.S1_a_at CA703978 - - 2e-1 At4g38420 sks9 (SKU5 Similar 9) C.G. S.X.
0.43 1e-154 547 Ta.4062.2.A1_at CD915997 - - 1e+0 At2g01505 CLE16 (CLAVATA3/ESR-RELATED 16) C.G. S.X.
0.07 4e-12 73 Ta.3391.1.A1_s_at CK169373 - - 4e-1 At3g16280 DNA binding / transcription factor C.G. S.X.
0.01 6e-2 40 TaAffx.128744.1.S1_at BG906875 - - 3e-4 At3g14205 phosphoinositide phosphatase family protein C.G. S.X.
0.02 2e-1 38 TaAffx.1170.1.S1_at CK210809 - - 5e-3 At5g39240 unknown protein C.G. S.X.
0.01 2e-1 38 TaAffx.115613.1.S1_at CF182118 - - 1e-61 At2g42600 ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2) C.G. S.X.
0.01 2e-1 38 TaAffx.110994.1.S1_s_at CA604139 - - 1e+1 At1g11700 unknown protein C.G. S.X.
0.02 2e-1 38 Ta.9411.3.S1_x_at CA499635 - - 2e-4 At1g16810 unknown protein C.G. S.X.
0.01 2e-1 38 Ta.9369.2.S1_at CA616245 - - 9e-41 At3g46520 ACT12 (ACTIN-12) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Arabidopsis thaliana At4g38420 829999 sks9 (SKU5 Similar 9) F:oxidoreductase activity, copper ion binding;P:unknown;C:plant-type cell wall;FBPMOA - - - C.G. S.X.
0.02 3e-1 38 Glycine max GmaAffx.16347.1.S1_at AW277924 - - 5e-1 At5g07880 SNAP29 C.G. S.X.
0.40 3e-119 428 Hordeum vulgare Contig21006_at Contig21006 - - 6e-3 Atmg00820 - C.G. S.X.
0.49 2e-102 375 Oryza sativa Os06g0104300 AK102494.1 - Pectinesterase (EC 3.1.1.11) (Fragment) 6e-18 At4g25240 SKS1 (SKU5 SIMILAR 1) C.G. S.X.
0.02 5e+0 34 Populus trichocarpa PtpAffx.15823.1.A1_at CV268506 hypothetical protein - 7e-34 At5g48450 sks3 (SKU5 Similar 3) C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1616958_s_at CF371819 hypothetical protein LOC100248073 - 1e-3 Atmg00840 - C.G. S.X.
0.51 4e-112 404 Zea mays Zm.6577.1.A1_at AI714833 - - 3e-13 At5g51480 SKS2 (SKU5 SIMILAR 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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