Gene omics information

Query gene ID	Ta.4019.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.84	93.6	Ta.4019.1.S1_at	BJ250474	-	-	5e-14	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	S.X.	H.G.	Please select
0.84	93.6	Ta.3342.1.S1_at	BJ219297	-	-	3e-14	At3g06310	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	S.X.	H.G.	Please select
0.75	89.8	Ta.1758.1.S1_at	CD892677	-	-	3e-9	At5g52840	NADH-ubiquinone oxidoreductase-related	S.X.	H.G.	Please select
0.67	86.3	Ta.5.1.S1_at	CK203655	ATP synthase beta subunit	-	5e-151	At5g08670	ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism	S.X.	H.G.	Please select
0.64	83.6	Ta.1052.2.S1_at	BJ229936	-	-	3e-64	At3g08580	AAC1 (ADP/ATP CARRIER 1)	S.X.	H.G.	Please select
0.64	83.6	Ta.1052.2.S1_x_at	BJ229936	-	-	3e-64	At3g08580	AAC1 (ADP/ATP CARRIER 1)	S.X.	H.G.	Please select
0.59	79.8	Ta.2598.1.S1_at	BJ238724	Mitochondrial ATP synthase precursor	-	8e-7	At2g21870	unknown protein	S.X.	H.G.	Please select
0.52	73.7	Ta.946.2.S1_at	BJ317512	-	-	1e-1	At4g29480	mitochondrial ATP synthase g subunit family protein	S.X.	H.G.	Please select
0.46	66.8	Ta.3135.1.S1_at	CK216213	-	-	2e-6	At1g04630	MEE4 (maternal effect embryo arrest 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	98.0	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.9	94.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM138201	genotype F48 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.7	93.3	GSM138189	genotype F38a developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.7	93.3	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
2.7	93.3	GSM138202	genotype F44 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.5	92.5	GSM138164	genotype D15 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-13	75	Ta.3097.1.S1_at	CD937885	-	-	2e-7	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select
0.02	5e-2	40	Ta.621.1.S1_x_at	CA636326	-	-	2e+1	At3g45730	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	36	TaAffx.58300.1.S1_at	CA620778	-	-	2e+1	At5g65390	AGP7	C.G.	S.X.	Please select
0.02	8e-1	36	TaAffx.4388.1.S1_at	CA743239	-	-	1e+0	At2g45710	40S ribosomal protein S27 (RPS27A)	C.G.	S.X.	Please select
0.01	8e-1	36	Ta.28372.1.S1_a_at	BJ250421	Vacuolar ATPase subunit c	-	1e-48	At4g38920	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)	C.G.	S.X.	Please select
0.03	3e+0	34	TaAffx.85699.2.S1_at	CA620447	-	-	4e-3	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.62625.1.S1_at	BQ609394	-	-	4e+0	At2g40170	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.38660.1.S1_at	BJ222566	-	-	1e+0	At4g27120	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.31909.1.S1_at	CA605391	-	-	9e-2	At1g69380	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	5e-14	79	Arabidopsis thaliana	At1g47260	841129	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	5e-24	113	Glycine max	Gma.2150.1.S1_at	CD401414	-	-	3e-21	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.79	0	1717	Hordeum vulgare	Contig4878_at	Contig4878	-	-	8e-19	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.57	3e-180	632	Oryza sativa	Os12g0169700	AK103904.1	-	Ferripyochelin-binding protein-like	8e-16	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	1e-24	115	Populus trichocarpa	PtpAffx.46654.1.S1_at	BU889616	hypothetical protein	-	3e-95	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	3e-22	105	Vitis vinifera	1608449_at	CB349956	hypothetical protein LOC100247109	-	6e-72	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.56	0	823	Zea mays	Zm.5237.1.A1_at	AY107290.1	hypothetical protein LOC100273890	-	2e-19	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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