Gene omics information

Query gene ID Ta.3983.1.S1_at
Gene name
Organism Triticum aestivum


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7188.0Ta.3983.1.S1_atCK202188--4e-11At3g49670BAM2 (BARELY ANY MERISTEM 2)S.X.H.G.
0.3448.1Ta.3003.1.S1_x_atBE398996--3e-44At5g26751ATSK11S.X.H.G.
0.2633.6Ta.9005.1.S1_s_atBQ162761--4e-6At1g61900unknown proteinS.X.H.G.
0.2125.5TaAffx.12776.1.A1_atBJ235720--4e+0At4g36945phospholipase C/ phosphoric diester hydrolaseS.X.H.G.
0.2125.5TaAffx.132784.1.A1_atBQ235909--1e+0At5g38720unknown proteinS.X.H.G.
0.2125.5Ta.4807.1.S1_atBJ236204--1e+0Atmg00910-S.X.H.G.
0.1922.4Ta.5250.1.S1_s_atCK198169--2e-46At4g14360dehydration-responsive protein-relatedS.X.H.G.
0.1415.8TaAffx.13750.1.S1_s_atCD916252--2e+0At3g04090SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A)S.X.H.G.
0.1314.6Ta.9558.1.S1_x_atCD883326--5e-1At5g44568unknown proteinS.X.H.G.
0.1213.3Ta.3285.1.S1_atBQ905252--2e-10At3g55000TON1A (TONNEAU 1)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
4.997.3GSM138171genotype C31 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.496.8GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivars
4.396.7GSM138205genotype H8 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.096.3GSM138145Genotype RL4452 developing seed at 5 days after anthesis, biological rep3 location SBGSE5937Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
4.096.3GSM138193genotype B33 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.896.0GSM138167genotype G30 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.695.6GSM138201genotype F48 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.695.6GSM138154genotype H5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.695.6GSM138194genotype J15 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.395.0GSM138189genotype F38a developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.281e-35151TaAffx.120936.1.S1_atBJ307684--1e-25At5g65700BAM1 (BARELY ANY MERISTEM 1)C.G.S.X.
0.142e-654TaAffx.109207.1.S1_atCA678684--3e-4At3g49670BAM2 (BARELY ANY MERISTEM 2)C.G.S.X.
0.032e-344Ta.18605.1.S1_atCA639540--2e-2At5g02800protein kinase family proteinC.G.S.X.
0.041e-242Ta.30723.1.S1_atCA667557--3e-4At1g48210serine/threonine protein kinase, putativeC.G.S.X.
0.034e-240TaAffx.15408.1.A1_atCD453842--6e-4At1g49730protein kinase family proteinC.G.S.X.
0.014e-240Ta.7443.1.S1_atCK153462Protein serine/threonine kinase-like-9e-26At5g13160PBS1 (avrPphB susceptible 1)C.G.S.X.
0.052e-138TaAffx.70444.1.A1_atCD492068--1e+0At5g02800protein kinase family proteinC.G.S.X.
0.032e-138TaAffx.58131.1.S1_atCA622180--7e-2At3g46410protein kinase family proteinC.G.S.X.
0.052e-138TaAffx.119870.1.A1_atBJ254554--1e+0At2g41820leucine-rich repeat transmembrane protein kinase, putativeC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.094e-1169Arabidopsis thalianaAt3g49670824129BAM2 (BARELY ANY MERISTEM 2)Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.---C.G.S.X.
0.109e-756Glycine maxGma.2496.1.S1_atAF244888.1receptor-like protein kinase 1-1e-75At5g65700BAM1 (BARELY ANY MERISTEM 1)C.G.S.X.
0.690706Hordeum vulgareContig13701_atContig13701--3e-12At3g49670BAM2 (BARELY ANY MERISTEM 2)C.G.S.X.
0.203e-47190Oryza sativaOs03g0773700AK102670.1-Receptor-like protein kinase 28e-9At3g49670BAM2 (BARELY ANY MERISTEM 2)C.G.S.X.
0.172e-757Populus trichocarpaPtpAffx.64361.1.S1_s_atCV228112hypothetical protein-5e-63At5g65700BAM1 (BARELY ANY MERISTEM 1)C.G.S.X.
0.167e-754Vitis vinifera1616189_atCF511570hypothetical protein LOC100260741-6e-18At1g75820CLV1 (CLAVATA 1)C.G.S.X.
0.163e-1065Zea maysZm.1140.1.S1_atBM073428hypothetical protein LOC100279272-4e-14At3g49670BAM2 (BARELY ANY MERISTEM 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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