CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.3922.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 93.4 Ta.3922.1.S1_at CD454673 - - 3e-6 At5g22300 NIT4 (NITRILASE 4) S.X. H.G.
0.60 81.0 Ta.6113.2.S1_x_at AJ611253 - - 2e+0 At2g46810 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.60 81.0 Ta.6113.1.S1_a_at CA668966 - - 3e+0 At5g22300 NIT4 (NITRILASE 4) S.X. H.G.
0.55 76.8 Ta.3253.1.S1_at BJ276858 hypersensitive induced response protein 3 - 2e-38 At5g62740 band 7 family protein S.X. H.G.
0.50 72.4 Ta.6113.1.S1_at CA668966 - - 3e+0 At5g22300 NIT4 (NITRILASE 4) S.X. H.G.
0.44 64.5 Ta.11475.1.S1_at CD873694 - - 2e-4 At4g27470 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.40 58.4 Ta.11475.1.S1_x_at CD873694 - - 2e-4 At4g27470 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.5 96.9 GSM143507 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.1 96.4 GSM143515 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.0 96.3 GSM143505 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.0 96.3 GSM143502 Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.5 95.4 GSM143517 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.4 95.2 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.9 94.0 GSM250894 TcLr34_3dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8 93.6 GSM314276 tissue type: pistil, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
2.8 93.6 GSM250888 TcLr34_3dpi_inoculated_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.7 93.3 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.55 0 898 Ta.3922.3.S1_x_at CA623436 - - 6e+0 At3g44310 NIT1 C.G. S.X.
0.55 0 898 Ta.3922.3.S1_at CA623436 - - 6e+0 At3g44310 NIT1 C.G. S.X.
0.51 4e-172 605 TaAffx.121798.1.S1_at BE216991 - - 5e-4 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.37 2e-128 460 Ta.3922.2.S1_at CA601742 - - 3e-1 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.42 3e-40 167 Ta.6113.1.S1_a_at CA668966 - - 3e+0 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.45 3e-40 167 Ta.6113.1.S1_at CA668966 - - 3e+0 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.17 2e-29 131 TaAffx.108985.1.S1_at CA681529 - - 4e+0 At5g57490 VDAC4 (VOLTAGE DEPENDENT ANION CHANNEL 4) C.G. S.X.
0.14 2e-20 101 Ta.6113.2.S1_x_at AJ611253 - - 2e+0 At2g46810 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 1e-2 42 TaAffx.28261.1.S1_at CA662580 - - 1e+0 At5g63790 ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 3e-6 54 Arabidopsis thaliana At5g22300 832290 NIT4 (NITRILASE 4) encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway. - - - C.G. S.X.
0.13 3e-4 48 Glycine max Gma.16036.1.A1_at BI974474 - - 4e-29 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.76 0 1752 Hordeum vulgare Contig7733_at Contig7733 - - 3e-9 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.59 0 827 Oryza sativa Os02g0635200 AK069985.1 - Nitrilase 2 4e-12 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.23 8e-14 79 Populus trichocarpa PtpAffx.14282.1.S1_at DN490949 - - 4e-24 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.09 6e-5 48 Vitis vinifera 1622360_at CB981283 hypothetical protein LOC100243086 - 5e-11 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
0.57 0 799 Zea mays Zm.16695.1.S1_at AY156978.1 nitrilase 2 - 1e-2 At5g22300 NIT4 (NITRILASE 4) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage