Gene omics information

Query gene ID	Ta.3916.2.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	82.0	Ta.3916.2.S1_x_at	CK213268	-	-	4e-1	At1g10960	ATFD1 (FERREDOXIN 1)	S.X.	H.G.	Please select
0.80	92.2	Ta.2392.1.S1_x_at	CA623973	-	-	2e+0	At3g07450	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.77	90.8	Ta.581.1.S1_at	AY123417.1	hypothetical LOC543355	-	1e-7	At1g32470	glycine cleavage system H protein, mitochondrial, putative	S.X.	H.G.	Please select
0.71	88.0	Ta.581.2.S1_a_at	CD862705	hypothetical LOC543355	-	9e-3	At2g35370	GDCH	S.X.	H.G.	Please select
0.61	82.0	Ta.2402.1.S1_a_at	CA722522	-	-	7e-12	At3g54890	LHCA1	S.X.	H.G.	Please select
0.46	66.8	Ta.3581.3.S1_x_at	CA598998	-	-	4e-7	At1g31330	PSAF (photosystem I subunit F)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.5	99.1	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.8	98.7	GSM298055	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.7	98.7	GSM298056	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.5	98.6	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.0	98.5	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM143501	Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.0	98.0	GSM298053	Leaf tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.9	98.0	GSM298066	Leaf tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM298077	Leaf tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.65	0	938	Ta.3916.1.S1_a_at	BE213337	-	-	5e-1	At1g10960	ATFD1 (FERREDOXIN 1)	C.G.	S.X.	Please select
0.55	2e-135	482	TaAffx.70478.1.A1_at	CA722395	-	-	4e+0	At1g19320	pathogenesis-related thaumatin family protein	C.G.	S.X.	Please select
0.51	2e-92	339	Ta.3916.3.S1_x_at	CA637132	-	-	4e+0	At5g20650	COPT5	C.G.	S.X.	Please select
0.51	2e-92	339	Ta.3916.3.S1_at	CA637132	-	-	4e+0	At5g20650	COPT5	C.G.	S.X.	Please select
0.35	5e-59	228	TaAffx.80290.1.S1_at	CA713147	-	-	8e-2	At1g10960	ATFD1 (FERREDOXIN 1)	C.G.	S.X.	Please select
0.35	5e-59	228	TaAffx.80290.1.S1_x_at	CA713147	-	-	8e-2	At1g10960	ATFD1 (FERREDOXIN 1)	C.G.	S.X.	Please select
0.29	1e-41	171	TaAffx.80290.2.S1_at	CA705716	-	-	7e-2	At1g10960	ATFD1 (FERREDOXIN 1)	C.G.	S.X.	Please select
0.05	1e-10	67	Ta.22403.1.S1_at	CA660275	-	-	4e+0	At5g55610	unknown protein	C.G.	S.X.	Please select
0.04	4e-10	65	TaAffx.66587.1.S1_at	BG909343	-	-	2e+0	At1g02620	GTP-binding protein (SAR1A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e-1	36	Arabidopsis thaliana	At1g10960	837639	ATFD1 (FERREDOXIN 1)	F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:chloroplast stroma, chloroplast;BOPAFMV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	9e-3	42	Glycine max	Gma.13333.1.A1_at	CD391431	-	-	3e-5	At1g60950	FED A	C.G.	S.X.	Please select
0.65	0	862	Hordeum vulgare	Contig1307_at	Contig1307	-	-	5e-1	At1g10960	ATFD1 (FERREDOXIN 1)	C.G.	S.X.	Please select
0.19	1e-67	258	Oryza sativa	Os08g0104600	D30763.1	-	Ferredoxin I, chloroplast precursor (Anti-diseaseprotein 1)	6e-33	At4g24190	SHD (SHEPHERD)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Populus trichocarpa	Ptp.2595.1.S1_s_at	CV234016	hypothetical protein	-	3e-8	At1g60950	FED A	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	3e-8	57	Vitis vinifera	1615927_s_at	CB972155	hypothetical protein LOC100249080	-	3e-2	At1g60950	FED A	C.G.	S.X.	Please select
0.41	2e-75	282	Zea mays	Zm.15818.1.S1_at	M73828.1	ferredoxin5	-	8e-2	At1g10960	ATFD1 (FERREDOXIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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