Gene omics information

Query gene ID	Ta.3909.1.A1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.4	Ta.3909.1.A1_x_at	BJ274929	-	-	8e-1	At3g01400	armadillo/beta-catenin repeat family protein	S.X.	H.G.	Please select
0.80	92.2	Ta.25619.2.S1_a_at	CA609960	-	-	1e+0	At2g14160	nucleic acid binding / nucleotide binding	S.X.	H.G.	Please select
0.61	82.0	TaAffx.129082.1.S1_x_at	CK154420	-	-	3e-6	At5g64460	-	S.X.	H.G.	Please select
0.42	60.9	Ta.8149.1.A1_x_at	CK205375	-	-	7e-35	At4g14240	-	S.X.	H.G.	Please select
0.22	27.1	Ta.29331.2.S1_x_at	CA611511	FD-like 6 protein	-	1e+1	At5g06280	unknown protein	S.X.	H.G.	Please select
0.10	11.3	Ta.9677.1.S1_x_at	CA652973	-	-	3e+1	At5g26692	-	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.4	99.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.6	98.3	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.5	98.3	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.7	97.9	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
5.5	97.8	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.9	97.3	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	2549	Ta.3909.1.A1_at	BJ274929	-	-	8e-1	At3g01400	armadillo/beta-catenin repeat family protein	C.G.	S.X.	Please select
0.24	2e-137	490	Ta.3909.2.A1_x_at	CA605883	-	-	1e+0	At5g38400	unknown protein	C.G.	S.X.	Please select
0.24	2e-137	490	Ta.3909.2.A1_at	CA605883	-	-	1e+0	At5g38400	unknown protein	C.G.	S.X.	Please select
0.27	7e-94	345	Ta.26545.1.A1_at	CD491182	-	-	2e-2	At1g68120	BPC3 (BASIC PENTACYSTEINE 3)	C.G.	S.X.	Please select
0.01	8e-1	36	Ta.27000.1.A1_at	CD454142	-	-	8e+0	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	C.G.	S.X.	Please select
0.01	8e-1	36	Ta.14459.1.S1_x_at	BJ218617	-	-	5e+0	At2g21070	FIO1 (FIONA1)	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.98423.1.A1_at	BE492977	-	-	2e-1	At5g03550	-	C.G.	S.X.	Please select
0.01	3e+0	34	TaAffx.87551.1.S1_at	CD871402	-	-	2e-10	At2g01680	ankyrin repeat family protein	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.86471.1.S1_at	CA607400	-	-	7e+0	At5g46873	-	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	8e-1	36	Arabidopsis thaliana	At3g01400	821320	armadillo/beta-catenin repeat family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MPOFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	1e+0	36	Glycine max	PsAffx.CL294Contig1_at	PsAffx.CL294Contig1	-	-	2e+0	At3g14290	PAE2	C.G.	S.X.	Please select
0.70	0	856	Hordeum vulgare	Contig9620_at	Contig9620	-	-	4e-2	At4g11020	unknown protein	C.G.	S.X.	Please select
0.34	0	716	Oryza sativa	Os09g0413600	AK107000.1	-	Rho GTPase activation protein domain containingprotein	1e+0	At1g30260	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.90695.1.A1_at	CK096557	hypothetical protein	-	6e-1	At1g75170	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	4e+0	32	Vitis vinifera	1618988_at	CB008145	-	-	5e-6	At3g18040	MPK9 (MAP KINASE 9)	C.G.	S.X.	Please select
0.02	9e-2	38	Zea mays	Zm.8571.1.A1_at	BM348144	hypothetical protein LOC100276153	-	1e-3	At4g18205	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage