CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.3721.1.S1_x_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 76.8 Ta.3721.1.S1_x_at CD928643 - - 2e+0 At4g27950 CRF4 (CYTOKININ RESPONSE FACTOR 4) S.X. H.G.
0.73 89.1 TaAffx.97854.1.S1_x_at BQ802779 - - 3e+0 At5g42190 ASK2 (ARABIDOPSIS SKP1-LIKE 2) S.X. H.G.
0.60 81.0 Ta.23457.1.S1_at CK209175 - - 5e-1 At1g70640 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein S.X. H.G.
0.55 76.8 Ta.7621.1.S1_at BJ268570 - - 1e+0 At4g27370 VIIIB S.X. H.G.
0.55 76.8 Ta.30561.1.A1_s_at CK205764 - - 1e+0 At1g28360 ERF12 (ERF DOMAIN PROTEIN 12) S.X. H.G.
0.50 72.4 Ta.5523.1.S1_at CK152129 - - 9e-3 At3g08810 kelch repeat-containing F-box family protein S.X. H.G.
0.44 64.5 Ta.5585.1.A1_x_at BQ619590 - - 6e+0 At3g16570 RALFL23 (ralf-like 23) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.8 99.8 GSM324490 Si+ B- rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
22.4 99.8 GSM324491 Si+ B- rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
22.4 99.8 GSM324484 Si- B- rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
15.6 99.6 GSM324495 Si+ B+ rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
13.3 99.5 GSM324493 Si+ B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
13.1 99.4 GSM324485 Si- B- rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
11.7 99.3 GSM324494 Si+ B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.8 99.1 GSM324492 Si+ B- rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.4 99.1 GSM324487 Si- B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.0 99.0 GSM324488 Si- B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.61 0 753 Ta.5585.1.A1_x_at BQ619590 - - 6e+0 At3g16570 RALFL23 (ralf-like 23) C.G. S.X.
0.40 1e-116 420 TaAffx.97854.1.S1_x_at BQ802779 - - 3e+0 At5g42190 ASK2 (ARABIDOPSIS SKP1-LIKE 2) C.G. S.X.
0.39 1e-100 367 Ta.16814.1.S1_at CA613162 - - 4e+0 At5g07950 unknown protein C.G. S.X.
0.42 3e-86 319 Ta.19070.1.S1_at CA646809 - - 1e+1 At5g53870 plastocyanin-like domain-containing protein C.G. S.X.
0.28 7e-81 301 TaAffx.83505.1.S1_at CA662211 - - 2e-1 At3g52380 CP33 C.G. S.X.
0.27 9e-71 268 TaAffx.77891.1.S1_at CA741204 - - 3e-4 At2g22200 AP2 domain-containing transcription factor C.G. S.X.
0.15 3e-43 176 TaAffx.83505.2.S1_s_at CA657652 - - 2e+0 At5g04340 ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6) C.G. S.X.
0.13 6e-32 139 Ta.5255.1.S1_at BT008937.1 drought-responsive factor-like transcription factor DRFL1a - 4e-3 At1g22190 AP2 domain-containing transcription factor, putative C.G. S.X.
0.16 2e-19 97 Ta.26980.1.A1_at CD453934 - - 3e-2 At1g22190 AP2 domain-containing transcription factor, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 34 Arabidopsis thaliana At4g27950 828908 CRF4 (CYTOKININ RESPONSE FACTOR 4) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. - - - C.G. S.X.
0.09 4e-12 73 Glycine max Gma.3807.1.S1_at BE822205 - - 8e-13 At1g36060 AP2 domain-containing transcription factor, putative C.G. S.X.
0.65 7e-141 500 Hordeum vulgare Contig12940_at Contig12940 - - 1e+0 At5g60490 FLA12 C.G. S.X.
0.37 4e-93 343 Oryza sativa Os02g0752800 AK105877.1 - Dehydration responsive element binding protein 2B(DREB2B protein) 7e-5 At2g22200 AP2 domain-containing transcription factor C.G. S.X.
0.03 1e-2 42 Populus trichocarpa PtpAffx.23077.1.S1_at BP929443 - - 1e-21 At2g22200 AP2 domain-containing transcription factor C.G. S.X.
0.05 1e-11 69 Vitis vinifera 1618386_at BQ800555 - - 4e-1 At1g63105 unknown protein C.G. S.X.
0.38 9e-66 250 Zea mays Zm.13842.1.A1_at AY104042.1 - - 1e-1 At1g06160 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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