Gene omics information

Query gene ID	Ta.359.3.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	Ta.359.3.S1_x_at	CA685131	-	-	2e-1	At3g28140	calmodulin-binding protein	S.X.	H.G.	Please select
0.91	98.2	Ta.359.2.S1_x_at	CD863544	-	-	3e-15	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.80	92.2	Ta.359.1.S1_x_at	BJ263340	-	-	3e-7	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.67	86.3	Ta.359.1.S1_a_at	BJ263340	-	-	3e-7	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.61	82.0	Ta.181.1.S1_at	AB052133.1	casein kinase II alpha	-	4e-55	At2g23080	casein kinase II alpha chain, putative	S.X.	H.G.	Please select
0.47	67.9	Ta.7345.1.S1_at	CK158442	-	-	1e-11	At3g62140	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.1	98.8	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.6	98.7	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM298088	Crown tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	1e-126	452	Ta.359.1.S1_a_at	BJ263340	-	-	3e-7	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.69	1e-126	452	Ta.359.1.S1_x_at	BJ263340	-	-	3e-7	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.46	5e-110	397	Ta.359.2.S1_x_at	CD863544	-	-	3e-15	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.04	4e-3	42	TaAffx.107144.1.S1_at	CA629455	-	-	1e+0	At1g71730	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	TaAffx.12845.1.S1_at	CD913452	-	-	2e-3	At2g33740	CUTA	C.G.	S.X.	Please select
0.04	2e-1	36	TaAffx.105959.1.S1_at	CA727348	-	-	7e-2	At4g17800	DNA-binding protein-related	C.G.	S.X.	Please select
0.03	3e+0	32	TaAffx.64304.1.S1_at	BJ305646	-	-	1e-3	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please select
0.04	3e+0	32	TaAffx.121182.1.S1_at	CA682749	-	-	9e-1	At1g13580	LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)	C.G.	S.X.	Please select
0.03	3e+0	32	TaAffx.107063.1.S1_at	CA635117	-	-	3e-1	At3g44430	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	36	Arabidopsis thaliana	At3g28140	822438	calmodulin-binding protein	F:calmodulin binding;P:RNA metabolic process;C:intracellular;BPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e+0	32	Glycine max	HgAffx.22156.1.S1_at	BI396924	-	-	1e-2	At1g54215	proline-rich family protein	C.G.	S.X.	Please select
0.68	2e-126	450	Hordeum vulgare	Contig19461_at	Contig19461	-	-	3e-1	At1g04260	MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7)	C.G.	S.X.	Please select
0.05	2e+0	34	Oryza sativa	Os05g0215200	9633.m01110	-	-	8e-1	At5g60680	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.157018.2.S1_s_at	BU883198	hypothetical protein	-	1e-56	At4g33090	APM1 (AMINOPEPTIDASE M1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	32	Vitis vinifera	1609169_at	CD801012	hypothetical protein LOC100244801	-	6e-2	At1g54215	proline-rich family protein	C.G.	S.X.	Please select
0.03	6e+0	30	Zea mays	Zm.8680.1.A1_at	BM075162	hypothetical protein LOC100277231	-	1e-3	At1g70760	CRR23 ((chlororespiratory reduction 23)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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