CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.3581.3.S1_x_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 92.2 Ta.3581.3.S1_x_at CA598998 - - 4e-7 At1g31330 PSAF (photosystem I subunit F) S.X. H.G.
0.67 86.3 Ta.581.1.S1_at AY123417.1 hypothetical LOC543355 - 1e-7 At1g32470 glycine cleavage system H protein, mitochondrial, putative S.X. H.G.
0.60 81.0 Ta.2392.1.S1_x_at CA623973 - - 2e+0 At3g07450 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.60 81.0 Ta.2402.1.S1_a_at CA722522 - - 7e-12 At3g54890 LHCA1 S.X. H.G.
0.36 51.9 Ta.3581.1.S1_x_at CA667505 - - 1e-2 At1g31330 PSAF (photosystem I subunit F) S.X. H.G.
0.19 22.4 Ta.1977.1.S1_x_at CK167391 - - 1e+1 At5g60590 yrdC protein-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.1 99.2 GSM298077 Leaf tissue of Solstice at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
10.0 99.1 GSM298078 Leaf tissue of Solstice at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
8.6 98.9 GSM298065 Leaf tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.1 98.1 GSM298079 Leaf tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.6 97.8 GSM298053 Leaf tissue of Harnesk at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.5 97.8 GSM314266 tissue type: seedling, leaf - rep1 GSE12508 Transcription patterns during wheat development
5.4 97.7 GSM298066 Leaf tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.3 97.6 GSM314268 tissue type: seedling, leaf - rep3 GSE12508 Transcription patterns during wheat development
5.2 97.5 GSM314267 tissue type: seedling, leaf - rep2 GSE12508 Transcription patterns during wheat development
5.2 97.5 GSM298080 Leaf tissue of Solstice at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 0 952 Ta.3581.1.S1_x_at CA667505 - - 1e-2 At1g31330 PSAF (photosystem I subunit F) C.G. S.X.
0.54 3e-131 468 Ta.20602.1.S1_at CA486438 - - 6e-6 At1g31330 PSAF (photosystem I subunit F) C.G. S.X.
0.50 3e-91 335 Ta.3581.2.S1_x_at CA600874 - - 5e+0 At4g03965 protein binding / zinc ion binding C.G. S.X.
0.13 9e-39 161 Ta.4255.2.S1_x_at CA627750 - - 4e-3 At1g75690 chaperone protein dnaJ-related C.G. S.X.
0.13 9e-39 161 Ta.4255.2.S1_at CA627750 - - 4e-3 At1g75690 chaperone protein dnaJ-related C.G. S.X.
0.06 1e-13 77 TaAffx.124247.1.S1_at BE217039 - - 6e+0 At1g01100 60S acidic ribosomal protein P1 (RPP1A) C.G. S.X.
0.04 2e-11 69 TaAffx.128414.37.S1_at BE217051 RuBisCO large subunit - 0 Atcg00490 - C.G. S.X.
0.04 2e-9 63 TaAffx.128414.38.S1_at BE216906 Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit - 0 Atcg00490 - C.G. S.X.
0.06 6e-9 61 TaAffx.8804.2.S1_at BE217049 - - 3e-13 At2g37170 PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 4e-7 56 Arabidopsis thaliana At1g31330 840021 PSAF (photosystem I subunit F) Encodes subunit F of photosystem I. - - - C.G. S.X.
0.19 1e-20 101 Glycine max Gma.11333.1.S1_s_at CD412591 - - 8e-22 At1g31330 PSAF (photosystem I subunit F) C.G. S.X.
0.67 0 948 Hordeum vulgare Contig2083_s_at Contig2083 photosystem-I PSI-F subunit precursor - 6e-7 At1g31330 PSAF (photosystem I subunit F) C.G. S.X.
0.47 3e-160 565 Oryza sativa Os03g0778100 AK060493.1 - Photosystem I reaction center subunit III,chloroplast precursor (Light-harvesting complex I 17 kDaprotein) (PSI-F) 6e-7 At1g31330 PSAF (photosystem I subunit F) C.G. S.X.
0.06 5e-1 36 Populus trichocarpa PtpAffx.77872.1.A1_at CK090915 - - 1e+0 Atcg01020 - C.G. S.X.
0.06 1e-7 56 Vitis vinifera 1614133_at CD711415 hypothetical protein LOC100255873 - 5e-2 At1g43800 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative C.G. S.X.
0.44 3e-160 563 Zea mays Zm.1735.1.S1_at AY103687.1 photosystem I reaction center subunit III - 2e-10 At1g31330 PSAF (photosystem I subunit F) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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