CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.3559.2.S1_a_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 83.1 Ta.3559.2.S1_a_at CA697904 - - 5e-12 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) S.X. H.G.
0.52 73.7 TaAffx.99201.1.S1_at CA685457 - - 5e-8 At4g18230 - S.X. H.G.
0.47 67.9 Ta.23742.2.S1_a_at BJ233343 - - 1e-55 At5g45550 mob1/phocein family protein S.X. H.G.
0.44 64.5 Ta.7295.3.S1_a_at CA611407 - - 4e-3 At2g23420 NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) S.X. H.G.
0.36 51.9 Ta.6777.2.A1_x_at CD885593 - - 2e-20 At5g51150 unknown protein S.X. H.G.
0.35 49.8 Ta.906.3.S1_at CA604628 - - 6e-3 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein S.X. H.G.
0.31 42.7 Ta.7299.2.S1_a_at CA605243 - - 5e-12 At2g44100 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) S.X. H.G.
0.29 39.2 Ta.5057.1.S1_x_at X89826.1 profilin - 2e-8 At4g29350 PFN2 (PROFILIN 2) S.X. H.G.
0.25 32.1 TaAffx.80488.2.S1_s_at CA642333 - - 1e+0 At1g54870 binding / catalytic/ oxidoreductase S.X. H.G.
0.23 29.0 TaAffx.128478.2.S1_s_at CA610609 - - 8e-11 At5g32470 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.6 97.0 GSM314274 tissue type: floral bracts, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
4.5 96.9 GSM314273 tissue type: floral bracts, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
4.2 96.6 GSM250914 Tc_7dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7 95.8 GSM314272 tissue type: floral bracts, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
3.4 95.2 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0 94.3 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
2.8 93.6 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.7 93.3 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.6 92.9 GSM250883 Tc_3dpi_mock_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5 92.5 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 4e-176 617 Ta.3559.1.S1_at BE213357 - - 3e-9 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) C.G. S.X.
0.24 3e-35 149 Ta.3559.3.S1_a_at CA623355 - - 4e-3 At2g01180 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) C.G. S.X.
0.03 3e-1 36 TaAffx.131121.3.S1_at CA665182 - - 1e+0 At1g70190 ribosomal protein L12 family protein C.G. S.X.
0.03 1e+0 34 TaAffx.84121.1.S1_at CA644205 - - 4e+0 At1g13607 - C.G. S.X.
0.04 1e+0 34 TaAffx.27399.1.S1_at CA677291 - - 8e-3 At5g64667 IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2) C.G. S.X.
0.02 1e+0 34 Ta.19409.1.S1_at CA651352 - - 1e+1 At4g00895 ATP synthase delta chain-related C.G. S.X.
0.02 1e+0 34 Ta.19409.1.S1_s_at CA651352 - - 1e+1 At4g00895 ATP synthase delta chain-related C.G. S.X.
0.03 4e+0 32 TaAffx.79541.1.S1_at CA713351 - - 3e+0 At5g09480 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.02 4e+0 32 Ta.6849.1.S1_at CK163325 - - 8e-1 At4g21190 emb1417 (embryo defective 1417) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 5e-12 71 Arabidopsis thaliana At3g02600 821299 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) Encodes phosphatidic acid phosphatase. Expressed during germination. - - - C.G. S.X.
0.03 6e+0 32 Glycine max HgAffx.12389.1.S1_at CB375593 - - 1e+1 At5g41960 unknown protein C.G. S.X.
0.34 2e-170 597 Hordeum vulgare Contig8594_at Contig8594 - - 2e-17 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) C.G. S.X.
0.28 2e-93 343 Oryza sativa Os09g0308900 AK121946.1 - Phosphoesterase, PA-phosphatase related familyprotein 3e-6 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) C.G. S.X.
0.16 6e-6 52 Populus trichocarpa PtpAffx.139092.1.S1_at CF230457 hypothetical protein - 2e-15 At1g15080 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) C.G. S.X.
0.05 3e-1 34 Vitis vinifera 1615294_x_at CF202128.1 - - 2e-2 At3g25099 unknown protein C.G. S.X.
0.34 8e-49 192 Zea mays Zm.16854.1.S1_at CF674957 hypothetical protein LOC100273231 - 1e-1 At3g18220 phosphatidic acid phosphatase family protein / PAP2 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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