Gene omics information

Query gene ID	Ta.3559.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.87	94.2	Ta.3559.1.S1_at	BE213357	-	-	3e-9	At1g15080	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	S.X.	H.G.	Please select
0.44	64.5	Ta.9300.1.S1_at	BJ238999	-	-	5e-1	At3g08770	LTP6	S.X.	H.G.	Please select
0.42	60.9	Ta.7540.2.S1_at	BJ320845	-	-	4e-6	At3g07260	forkhead-associated domain-containing protein / FHA domain-containing protein	S.X.	H.G.	Please select
0.37	53.0	Ta.25681.1.S1_at	AJ614892	-	-	3e-2	At2g22145	-	S.X.	H.G.	Please select
0.35	49.8	TaAffx.113600.1.S1_s_at	CA608828	-	-	6e+0	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	S.X.	H.G.	Please select
0.31	42.7	Ta.7296.1.S1_at	BJ252648	-	-	4e-5	At3g45000	VPS24.2	S.X.	H.G.	Please select
0.24	30.3	Ta.7286.3.S1_a_at	CA646766	-	-	1e-9	At3g56490	zinc-binding protein, putative / protein kinase C inhibitor, putative	S.X.	H.G.	Please select
0.23	29.0	Ta.23742.1.S1_at	CA668797	-	-	5e-66	At5g45550	mob1/phocein family protein	S.X.	H.G.	Please select
0.21	25.5	Ta.8152.1.S1_at	CD871046	-	-	4e-22	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	S.X.	H.G.	Please select
0.19	22.4	Ta.22913.1.S1_at	CA715053	-	-	1e+1	At5g61200	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	94.8	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.6	92.9	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.4	92.0	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.3	91.5	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.3	91.5	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	1e-175	617	Ta.3559.2.S1_a_at	CA697904	-	-	5e-12	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	C.G.	S.X.	Please select
0.34	6e-159	561	Ta.3559.3.S1_a_at	CA623355	-	-	4e-3	At2g01180	ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)	C.G.	S.X.	Please select
0.22	7e-63	242	TaAffx.83433.1.S1_at	CA657611	-	-	1e-3	At2g01180	ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)	C.G.	S.X.	Please select
0.05	1e-11	71	TaAffx.79874.1.S1_x_at	CA706888	-	-	1e+1	At3g21150	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.05	1e-11	71	TaAffx.79874.1.S1_at	CA706888	-	-	1e+1	At3g21150	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.06	1e-8	61	Ta.6147.1.S1_x_at	BQ619937	-	-	7e-7	At1g15080	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	C.G.	S.X.	Please select
0.07	2e-7	57	Ta.30410.1.A1_at	CK209142	-	-	1e-10	At2g01180	ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)	C.G.	S.X.	Please select
0.03	5e-2	40	TaAffx.80885.2.A1_at	BJ287333	-	-	1e-3	At2g01180	ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)	C.G.	S.X.	Please select
0.02	8e-1	36	TaAffx.131121.3.S1_at	CA665182	-	-	1e+0	At1g70190	ribosomal protein L12 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	3e-9	63	Arabidopsis thaliana	At1g15080	838072	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-7	57	Glycine max	GmaAffx.30344.1.S1_at	AW349341	-	-	5e-6	At2g01180	ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)	C.G.	S.X.	Please select
0.82	0	1992	Hordeum vulgare	Contig8594_at	Contig8594	-	-	2e-17	At1g15080	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	C.G.	S.X.	Please select
0.44	0	837	Oryza sativa	Os09g0308900	AK121946.1	-	Phosphoesterase, PA-phosphatase related familyprotein	3e-6	At1g15080	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	3e-10	67	Populus trichocarpa	PtpAffx.21027.1.A1_at	BP931070	hypothetical protein	-	1e-7	At1g15080	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-4	44	Vitis vinifera	1621834_at	BQ794561	hypothetical protein LOC100254175	-	2e-5	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	C.G.	S.X.	Please select
0.39	2e-122	438	Zea mays	Zm.16854.1.S1_at	CF674957	hypothetical protein LOC100273231	-	1e-1	At3g18220	phosphatidic acid phosphatase family protein / PAP2 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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