Gene omics information

Query gene ID	Ta.3543.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.3543.1.A1_at	BJ220370	-	-	3e-1	At2g17785	zinc-binding protein-related	S.X.	H.G.	Please select
0.50	72.4	Ta.27940.1.A1_s_at	BQ169626	-	-	1e+0	At1g01380	ETC1 (ENHANCER OF TRY AND CPC 1)	S.X.	H.G.	Please select
0.44	64.5	TaAffx.12303.1.S1_at	CD938363	-	-	1e-1	At4g37240	unknown protein	S.X.	H.G.	Please select
0.44	64.5	Ta.6587.2.S1_x_at	CF133308	-	-	3e-1	At2g40100	LHCB4.3 (light harvesting complex PSII)	S.X.	H.G.	Please select
0.43	62.2	Ta.6587.2.S1_a_at	CF133308	-	-	3e-1	At2g40100	LHCB4.3 (light harvesting complex PSII)	S.X.	H.G.	Please select
0.40	58.4	TaAffx.13383.1.A1_at	BG904557	-	-	8e-1	At1g17800	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.6	99.1	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.6	98.3	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.1	97.5	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.0	97.4	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM139920	Anther diplotene-anaphaseI rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.6	97.0	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM139916	Anther leptotene-pachytene rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.4	96.8	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.2	96.6	GSM139929	Anther immature pollen rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	1e-111	402	TaAffx.55593.1.S1_at	CA663890	-	-	2e-1	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	C.G.	S.X.	Please select
0.18	2e-21	103	TaAffx.28435.1.S1_at	CA660184	-	-	3e+0	At1g29120	unknown protein	C.G.	S.X.	Please select
0.13	4e-16	85	TaAffx.92915.1.A1_at	BJ242171	-	-	1e+1	At5g25540	CID6 (CTC-Interacting Domain 6)	C.G.	S.X.	Please select
0.10	2e-14	79	Ta.6996.1.S1_at	BJ317930	-	-	7e-1	At5g11600	unknown protein	C.G.	S.X.	Please select
0.11	3e-13	75	Ta.5455.1.S1_at	BQ166677	-	-	2e+0	At1g63230	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.13	1e-9	63	Ta.26968.1.A1_at	CD454509	-	-	2e+0	At5g41810	unknown protein	C.G.	S.X.	Please select
0.05	5e-6	52	TaAffx.96188.2.S1_at	CA594527	-	-	6e+0	At5g65274	-	C.G.	S.X.	Please select
0.07	5e-6	52	Ta.27763.1.S1_at	CD875652	-	-	8e+0	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.06	2e-5	50	TaAffx.30076.1.S1_at	CA629155	-	-	4e+0	At5g17090	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At2g17785	816288	zinc-binding protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	HgAffx.17534.1.S1_at	CB278822	-	-	4e+0	At5g39640	unknown protein	C.G.	S.X.	Please select
0.33	4e-48	190	Hordeum vulgare	Contig5423_at	Contig5423	-	-	6e-1	At1g09370	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select
0.04	6e-1	36	Oryza sativa	Os.17641.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.45821.1.A1_at	CK093452	tubulin, beta chain	-	7e-4	At1g75780	TUB1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	32	Vitis vinifera	1617411_at	BQ797398	hypothetical protein LOC100244514	-	2e-2	At5g57150	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	ZmAffx.928.1.A1_at	AI795442	-	-	8e-1	At5g24270	SOS3 (SALT OVERLY SENSITIVE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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