Gene omics information

Query gene ID	Ta.3507.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.0	Ta.3507.1.S1_at	BQ172406	-	-	1e-1	At1g73280	scpl3 (serine carboxypeptidase-like 3)	S.X.	H.G.	Please select
0.67	86.3	TaAffx.122846.1.S1_at	BJ259558	-	-	7e-2	At5g37580	-	S.X.	H.G.	Please select
0.67	86.3	Ta.3507.2.S1_a_at	BJ265270	-	-	1e+0	At4g29590	methyltransferase	S.X.	H.G.	Please select
0.67	86.3	TaAffx.122846.2.S1_s_at	CA616137	-	-	6e-2	At5g37580	-	S.X.	H.G.	Please select
0.50	72.4	TaAffx.122846.3.S1_s_at	CA646635	-	-	1e+0	At4g29590	methyltransferase	S.X.	H.G.	Please select
0.36	51.9	TaAffx.79574.1.S1_at	CA602622	-	-	3e-1	At2g06005	unknown protein	S.X.	H.G.	Please select
0.33	46.9	Ta.6899.2.S1_a_at	CA608077	-	-	4e-3	At3g48530	KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1)	S.X.	H.G.	Please select
0.33	46.9	Ta.6899.3.S1_at	CA605128	-	-	4e+0	At5g18180	Gar1 RNA-binding region family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.8	99.8	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
16.1	99.6	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
11.4	99.3	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
10.7	99.2	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
10.6	99.2	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
10.4	99.2	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.8	99.1	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
9.7	99.1	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.1	99.0	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.6	98.9	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	8e-117	420	Ta.3507.2.S1_a_at	BJ265270	-	-	1e+0	At4g29590	methyltransferase	C.G.	S.X.	Please select
0.14	1e-26	121	TaAffx.122846.3.S1_at	CA646635	-	-	1e+0	At4g29590	methyltransferase	C.G.	S.X.	Please select
0.14	1e-26	121	TaAffx.122846.3.S1_s_at	CA646635	-	-	1e+0	At4g29590	methyltransferase	C.G.	S.X.	Please select
0.06	1e-17	91	TaAffx.122846.1.S1_at	BJ259558	-	-	7e-2	At5g37580	-	C.G.	S.X.	Please select
0.17	4e-14	79	TaAffx.122548.1.S1_at	CA732346	-	-	1e+0	At3g27090	-	C.G.	S.X.	Please select
0.09	1e-10	67	TaAffx.58974.1.S1_at	CA611030	-	-	6e-2	At3g46200	aTNUDT9 (Arabidopsis thaliana Nudix hydrolase homolog 9)	C.G.	S.X.	Please select
0.06	5e-10	65	Ta.13054.1.S1_at	CA485040	-	-	1e-3	At2g23000	scpl10 (serine carboxypeptidase-like 10)	C.G.	S.X.	Please select
0.11	9e-9	61	TaAffx.43855.1.S1_at	BE492137	-	-	2e-1	At5g09640	SCPL19	C.G.	S.X.	Please select
0.09	1e-4	48	TaAffx.119839.1.S1_at	BJ255956	-	-	1e-1	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At1g73280	843662	scpl3 (serine carboxypeptidase-like 3)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-4	48	Glycine max	Gma.2669.1.S1_at	CA935964	-	-	4e-6	At5g09640	SCPL19	C.G.	S.X.	Please select
0.10	3e-10	65	Hordeum vulgare	HV_CEb0015D22r2_at	HV_CEb0015D22r2	-	-	3e-1	At3g53570	AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)	C.G.	S.X.	Please select
0.18	4e-9	63	Oryza sativa	Os11g0430000	AJ417520.1	-	Serine carboxypeptidase I precursor (EC 3.4.16.5)(Carboxypeptidase C) (CP-MI)	2e+0	At2g47920	kinase interacting family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e-2	42	Populus trichocarpa	PtpAffx.216396.1.S1_at	pmrna31154	hypothetical protein	-	1e-14	At5g36180	scpl1 (serine carboxypeptidase-like 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e+0	32	Vitis vinifera	1612768_at	CF403786	hypothetical protein LOC100244114	-	1e+0	At4g19100	unknown protein	C.G.	S.X.	Please select
0.09	1e-5	50	Zea mays	Zm.17773.1.A1_at	CK371251	serine carboxypeptidase 1	-	8e-1	At1g53950	ubiquitin family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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