Gene omics information

Query gene ID	Ta.3504.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	78.6	Ta.3504.1.A1_at	CK163751	-	-	1e+0	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	S.X.	H.G.	Please select
0.60	81.0	Ta.25927.1.A1_x_at	CD454513	-	-	5e+0	At2g36916	unknown protein	S.X.	H.G.	Please select
0.53	74.9	TaAffx.12607.1.S1_at	BE429383	-	-	2e-1	At1g45191	-	S.X.	H.G.	Please select
0.40	58.4	Ta.25927.1.A1_at	CD454513	-	-	5e+0	At2g36916	unknown protein	S.X.	H.G.	Please select
0.15	17.1	Ta.14181.1.S1_x_at	BJ244730	-	-	4e+0	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	S.X.	H.G.	Please select
0.11	12.4	TaAffx.131750.2.S1_at	CA597878	-	-	3e+0	At2g41840	40S ribosomal protein S2 (RPS2C)	S.X.	H.G.	Please select
0.05	6.7	TaAffx.76521.1.S1_at	CD881201	-	-	1e+0	At2g22241	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.4	99.8	GSM314267	tissue type: seedling, leaf - rep2	GSE12508	Transcription patterns during wheat development
20.0	99.7	GSM143501	Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
18.8	99.7	GSM143498	Jupateco_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
17.4	99.6	GSM314264	tissue type: seedling, crown - rep2	GSE12508	Transcription patterns during wheat development
15.0	99.6	GSM246384	SB165_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
14.7	99.5	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development
14.0	99.5	GSM246397	SB57_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
13.7	99.5	GSM246396	SB57_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
13.0	99.4	GSM246386	SB169_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
11.4	99.3	GSM143499	Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	4e-81	301	Ta.3504.2.A1_at	CA683846	-	-	3e-4	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	C.G.	S.X.	Please select
0.28	1e-34	147	Ta.16864.1.S1_at	CA613936	-	-	4e+0	At1g23220	dynein light chain type 1 family protein	C.G.	S.X.	Please select
0.03	1e-1	38	TaAffx.59742.1.S1_x_at	CA596026	-	-	2e-2	At2g30560	glycine-rich protein	C.G.	S.X.	Please select
0.03	1e-1	38	TaAffx.59742.1.S1_at	CA596026	-	-	2e-2	At2g30560	glycine-rich protein	C.G.	S.X.	Please select
0.03	1e-1	38	Ta.29794.1.A1_x_at	CK195719	Xylanase inhibitor-like	-	2e+1	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	C.G.	S.X.	Please select
0.03	1e-1	38	Ta.11563.2.A1_a_at	BQ170363	-	-	9e-1	At3g60340	palmitoyl protein thioesterase family protein	C.G.	S.X.	Please select
0.03	1e-1	38	Ta.11563.1.A1_x_at	BJ221638	-	-	3e-1	At3g52980	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	4e-1	36	TaAffx.64943.1.S1_at	BJ268999	-	-	9e-1	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	C.G.	S.X.	Please select
0.03	4e-1	36	TaAffx.17024.1.S1_at	CK211302	-	-	7e+0	At1g63200	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At3g16150	820860	L-asparaginase, putative / L-asparagine amidohydrolase, putative	F:asparaginase activity;P:glycoprotein catabolic process;C:cellular_component unknown;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	6e-7	56	Glycine max	Gma.1179.1.S1_at	AY096000.1	L-asparaginase	-	5e-39	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	C.G.	S.X.	Please select
0.73	0	771	Hordeum vulgare	Contig8740_at	Contig8740	-	-	8e-3	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	C.G.	S.X.	Please select
0.44	2e-106	387	Oryza sativa	Os04g0650700	AK058733.1	-	L-asparaginase (L-asparagine amidohydrolase)	1e-1	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.47668.1.A1_at	CV254098	hypothetical protein	-	2e-9	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	32	Vitis vinifera	1618560_at	CB348377	-	-	4e-3	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.03	2e-1	36	Zea mays	Zm.12021.1.A1_at	BM382722	hypothetical protein LOC100273474	-	4e+0	At5g10140	FLC (FLOWERING LOCUS C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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