CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.3478.3.S1_x_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.3 Ta.3478.3.S1_x_at CA637826 - - 2e-11 At1g69670 CUL3B (CULLIN 3B) S.X. H.G.
0.67 86.3 Ta.12647.3.S1_x_at CA654695 - - 1e+0 At2g33220 - S.X. H.G.
0.53 74.9 TaAffx.34241.2.S1_x_at CA722326 - - 4e+0 At5g51960 - S.X. H.G.
0.44 64.5 TaAffx.34241.2.S1_at CA722326 - - 4e+0 At5g51960 - S.X. H.G.
0.36 51.9 Ta.14479.3.S1_x_at CA630294 - - 7e-18 At2g05830 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein S.X. H.G.
0.32 44.4 TaAffx.25126.1.S1_at CA705922 - - 3e+0 At3g17460 PHD finger family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.3 99.6 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
8.1 98.8 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.4 96.8 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.2 96.6 GSM138210 genotype B65 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8 96.0 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.5 95.4 GSM138177 genotype A40 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9 94.0 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8 93.6 GSM138145 Genotype RL4452 developing seed at 5 days after anthesis, biological rep3 location SB GSE5937 Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
2.7 93.3 GSM138162 genotype E5 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6 92.9 GSM111232 genotype H8 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 0 634 Ta.3478.1.S1_at CK157046 - - 2e-27 At1g26830 ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) C.G. S.X.
0.65 4e-179 626 Ta.3478.2.S1_a_at CA648423 - - 9e-20 At1g26830 ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) C.G. S.X.
0.65 4e-179 626 Ta.3478.2.S1_x_at CA648423 - - 9e-20 At1g26830 ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) C.G. S.X.
0.17 6e-21 101 Ta.4351.1.S1_at CA646025 - - 5e-8 At1g26830 ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) C.G. S.X.
0.03 3e-1 36 TaAffx.100035.2.S1_at CA695684 - - 7e-5 At5g50210 QS (QUINOLINATE SYNTHASE) C.G. S.X.
0.02 1e+0 34 Ta.4749.1.A1_at BJ276884 - - 9e-12 At3g62870 60S ribosomal protein L7A (RPL7aB) C.G. S.X.
0.02 1e+0 34 Ta.407.1.A1_at BQ172136 - - 1e-1 At3g01740 - C.G. S.X.
0.03 4e+0 32 TaAffx.58033.1.S1_at CA622958 - - 4e-22 At4g12400 stress-inducible protein, putative C.G. S.X.
0.03 4e+0 32 TaAffx.38646.1.S1_at BJ223409 - - 1e+0 At1g44980 pectinesterase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-11 69 Arabidopsis thaliana At1g69670 843303 CUL3B (CULLIN 3B) cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification. - - - C.G. S.X.
0.16 3e-11 69 Glycine max GmaAffx.71620.1.S1_at BM523371 - - 9e-24 At1g26830 ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) C.G. S.X.
0.52 4e-165 579 Hordeum vulgare Contig14390_at Contig14390 - - 3e-11 At1g26830 ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) C.G. S.X.
0.22 6e-87 321 Oryza sativa Os02g0746000 AK072402.1 - Cullin homolog 3 (CUL-3). Splice isoform 2 9e-42 At1g26830 ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) C.G. S.X.
0.20 5e-16 85 Populus trichocarpa Ptp.3458.1.S1_at DN492881 hypothetical protein - 3e-30 At1g26830 ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) C.G. S.X.
0.16 8e-5 46 Vitis vinifera 1622704_at BQ800356 hypothetical protein LOC100254227 - 6e-18 At1g69670 CUL3B (CULLIN 3B) C.G. S.X.
0.03 7e+0 30 Zea mays Zm.3601.1.A1_at AW018168 - - 7e+0 At4g26170 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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