Gene omics information

Query gene ID	Ta.3463.3.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.79	91.3	Ta.3463.3.S1_x_at	CA681836	-	-	2e-5	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	S.X.	H.G.	Please select
0.48	69.0	Ta.11338.3.S1_x_at	CA647367	-	-	4e+0	At3g47200	unknown protein	S.X.	H.G.	Please select
0.45	65.2	Ta.7861.2.S1_a_at	CA692192	-	-	9e-1	At4g19640	ARA7	S.X.	H.G.	Please select
0.44	64.5	Ta.3463.3.S1_a_at	CA681836	-	-	2e-5	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	S.X.	H.G.	Please select
0.41	59.6	Ta.7861.2.S1_x_at	CA692192	-	-	9e-1	At4g19640	ARA7	S.X.	H.G.	Please select
0.39	56.1	Ta.14532.1.S1_at	CD900916	-	-	4e-45	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	S.X.	H.G.	Please select
0.36	51.9	Ta.2305.3.S1_a_at	CA603527	-	-	4e+0	At5g59305	unknown protein	S.X.	H.G.	Please select
0.36	51.9	Ta.3335.1.S1_at	CD890295	-	-	2e+0	At3g53520	UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1)	S.X.	H.G.	Please select
0.35	49.8	Ta.18508.1.S1_a_at	CA652261	-	-	4e-1	At4g37470	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.34	48.1	Ta.28498.1.S1_at	CK154432	-	-	3e+0	At5g64330	NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	98.2	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.3	98.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.9	98.0	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.6	97.8	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM250894	TcLr34_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM143520	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.0	96.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1057	Ta.3463.3.S1_a_at	CA681836	-	-	2e-5	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	C.G.	S.X.	Please select
0.53	1e-179	628	Ta.3463.1.S1_x_at	BQ753035	-	-	4e-20	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	C.G.	S.X.	Please select
0.44	6e-98	357	Ta.3463.2.S1_at	CA621825	-	-	4e-6	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	C.G.	S.X.	Please select
0.36	2e-76	286	Ta.8244.1.S1_at	CN012684	-	-	3e-14	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	C.G.	S.X.	Please select
0.44	3e-29	129	TaAffx.31171.1.S1_at	CA618854	-	-	3e-4	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	C.G.	S.X.	Please select
0.20	2e-26	119	Ta.26820.1.A1_at	CD491334	-	-	2e-30	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	C.G.	S.X.	Please select
0.19	1e-21	103	Ta.8244.2.S1_a_at	CA651206	-	-	1e-15	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	C.G.	S.X.	Please select
0.19	1e-21	103	Ta.8244.2.S1_x_at	CA651206	-	-	1e-15	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	C.G.	S.X.	Please select
0.04	7e-2	38	Ta.10234.3.S1_x_at	BJ246096	-	-	3e-1	At2g23780	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	2e-5	50	Arabidopsis thaliana	At4g36410	829793	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	ubiquitin-conjugating enzyme	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	4e-7	56	Glycine max	GmaAffx.92802.1.S1_s_at	CF806550	-	-	8e-33	At1g75440	UBC16 (ubiquitin-conjugating enzyme 16)	C.G.	S.X.	Please select
0.56	7e-176	615	Hordeum vulgare	Contig8813_at	Contig8813	-	-	4e-23	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	C.G.	S.X.	Please select
0.42	4e-85	315	Oryza sativa	Os03g0681400	AK103809.1	-	Ubiquitin-conjugating enzymes domain containingprotein	1e-13	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	6e-3	42	Populus trichocarpa	PtpAffx.205792.1.S1_at	pmrna11454	hypothetical protein	-	2e-47	At1g45050	ATUBC2-1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	2e-15	81	Vitis vinifera	1620685_s_at	CF371876	hypothetical protein LOC100260813	-	4e-85	At1g75440	UBC16 (ubiquitin-conjugating enzyme 16)	C.G.	S.X.	Please select
0.31	3e-42	171	Zea mays	Zm.8033.1.S1_at	CO522473	ubiquitin-conjugating enzyme E2 W	-	1e-26	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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