Gene omics information

Query gene ID	Ta.3380.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.3380.1.S1_at	AB042629.1	-	-	2e-2	At2g36026	-	S.X.	H.G.	Please select
0.91	98.2	Ta.1362.1.S1_at	AB042631.1	-	-	1e-2	At5g25130	CYP71B12	S.X.	H.G.	Please select
0.83	93.4	Ta.23822.1.S1_at	AF123603.1	-	-	6e-2	At2g36026	-	S.X.	H.G.	Please select
0.83	93.4	Ta.3381.1.S1_at	AF123602.1	-	-	9e-1	At4g31940	CYP82C4	S.X.	H.G.	Please select
0.73	89.1	Ta.3382.1.S1_at	AB042627.1	-	-	4e+0	At3g21460	electron carrier/ protein disulfide oxidoreductase	S.X.	H.G.	Please select
0.67	86.3	Ta.10688.1.S1_at	AB094060.1	indole synthase	-	3e-3	At4g02610	tryptophan synthase, alpha subunit, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
70.4	100.0	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
68.7	100.0	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
60.9	99.9	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
60.3	99.9	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
40.7	99.9	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
34.6	99.9	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
7.2	98.5	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development
5.6	97.8	GSM314264	tissue type: seedling, crown - rep2	GSE12508	Transcription patterns during wheat development
5.6	97.8	GSM314263	tissue type: seedling, crown - rep1	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM315202	target strand labeled: Sense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.72	0	1084	Ta.23822.1.S1_at	AF123603.1	-	-	6e-2	At2g36026	-	C.G.	S.X.	Please select
0.21	2e-100	367	TaAffx.107391.1.S1_at	CA700505	-	-	1e+0	At3g57390	AGL18	C.G.	S.X.	Please select
0.20	2e-54	214	TaAffx.5060.1.S1_at	CA724022	-	-	1e+0	At2g30766	unknown protein	C.G.	S.X.	Please select
0.32	1e-34	149	Ta.3381.1.S1_at	AF123602.1	-	-	9e-1	At4g31940	CYP82C4	C.G.	S.X.	Please select
0.14	6e-24	113	TaAffx.57561.1.S1_at	CA627082	-	-	4e+0	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please select
0.08	2e-14	81	TaAffx.30325.1.S1_at	CA626164	-	-	1e+1	At5g23030	TET12 (TETRASPANIN12)	C.G.	S.X.	Please select
0.05	3e-10	67	Ta.3382.1.S1_at	AB042627.1	-	-	4e+0	At3g21460	electron carrier/ protein disulfide oxidoreductase	C.G.	S.X.	Please select
0.05	8e-8	59	TaAffx.116369.1.S1_x_at	CD884412	-	-	5e+0	At5g41440	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.05	8e-8	59	TaAffx.116369.1.S1_s_at	CD884412	-	-	5e+0	At5g41440	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	42	Arabidopsis thaliana	At2g36026	6241209	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	2e+0	36	Glycine max	HgAffx.4018.1.S1_at	CK348672	-	-	1e+0	At2g05510	glycine-rich protein	C.G.	S.X.	Please select
0.03	1e-4	48	Hordeum vulgare	Contig11957_at	Contig11957	-	-	5e-2	At3g48280	CYP71A25	C.G.	S.X.	Please select
0.02	3e-2	42	Oryza sativa	OsAffx.12678.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	2e+0	36	Populus trichocarpa	Ptp.337.1.A1_at	CV225523	hypothetical protein	-	2e+0	At1g53720	CYP59 (CYCLOPHILIN 59)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	1e+0	34	Vitis vinifera	1615000_at	CF517387	-	-	4e+0	At2g25820	transcription factor	C.G.	S.X.	Please select
0.37	7e-105	381	Zea mays	Zm.5558.1.A1_at	AY072298.1	-	-	3e-1	At3g20100	CYP705A19	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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