CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.3366.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.78 91.1 Ta.3366.1.S1_at CK195723 - - 2e-8 At4g15560 CLA1 (CLOROPLASTOS ALTERADOS 1) S.X. H.G.
0.52 73.7 Ta.21023.1.S1_s_at CA642252 - - 1e+0 At5g49280 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.51 73.0 Ta.23424.1.S1_at CD453560 - - 4e-7 At2g47400 CP12-1 S.X. H.G.
0.49 69.7 Ta.6572.1.S1_a_at CK212997 peroxiredoxin Q - 2e-10 At3g26060 ATPRX Q S.X. H.G.
0.49 69.7 Ta.5949.1.S1_at CD919637 - - 6e-4 At3g54660 GR (GLUTATHIONE REDUCTASE) S.X. H.G.
0.48 69.0 Ta.1391.1.S1_x_at CA702000 - - 2e-12 At2g24090 ribosomal protein L35 family protein S.X. H.G.
0.47 67.9 Ta.27728.1.S1_at AF314182.2 triose phosphate translocator - 3e-22 At5g46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) S.X. H.G.
0.47 67.9 Ta.14671.2.S1_a_at CK213901 - - 2e+0 At5g24170 - S.X. H.G.
0.47 67.9 TaAffx.21371.1.S1_at BJ318198 - - 8e-10 At5g45170 CbbY protein-related S.X. H.G.
0.45 65.2 Ta.17814.1.S1_at CA625092 - - 3e-2 At4g22830 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.2 99.6 GSM298079 Leaf tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
15.1 99.6 GSM298080 Leaf tissue of Solstice at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
8.8 98.9 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
8.1 98.8 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
8.0 98.8 GSM298068 Leaf tissue of Paragon at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.9 98.4 GSM314266 tissue type: seedling, leaf - rep1 GSE12508 Transcription patterns during wheat development
6.8 98.4 GSM298056 Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.9 98.0 GSM298065 Leaf tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.0 97.4 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.6 97.0 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-7 59 Ta.22143.1.S1_at CA725173 - - 3e+0 At3g53220 thioredoxin family protein C.G. S.X.
0.01 2e-6 56 Ta.28809.1.S1_at BJ249389 - - 2e-5 At3g55460 SCL30 C.G. S.X.
0.01 2e-6 56 Ta.28809.1.S1_x_at BJ249389 - - 2e-5 At3g55460 SCL30 C.G. S.X.
0.01 2e-5 52 Ta.28393.2.S1_at CK195651 - - 2e-27 At3g20050 ATTCP-1 C.G. S.X.
0.01 2e-5 52 Ta.28393.2.S1_x_at CK195651 - - 2e-27 At3g20050 ATTCP-1 C.G. S.X.
0.01 6e-3 44 Ta.5406.1.S1_at CK195780 - - 1e-2 At4g17690 peroxidase, putative C.G. S.X.
0.01 6e-3 44 Ta.28866.2.A1_s_at CK193087 - - 5e-1 At2g17300 unknown protein C.G. S.X.
0.02 2e-2 42 Ta.3035.2.S1_at CA745829 - - 1e+0 At4g04470 PMP22 C.G. S.X.
0.02 2e-2 42 Ta.3035.2.S1_x_at CA745829 - - 1e+0 At4g04470 PMP22 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-8 61 Arabidopsis thaliana At4g15560 827230 CLA1 (CLOROPLASTOS ALTERADOS 1) Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis - - - C.G. S.X.
0.09 3e-2 42 Glycine max Gma.11205.1.S1_a_at BF066553 - - 1e-61 At4g15560 CLA1 (CLOROPLASTOS ALTERADOS 1) C.G. S.X.
0.39 0 928 Hordeum vulgare Contig18487_at Contig18487 - - 6e-3 At4g15560 CLA1 (CLOROPLASTOS ALTERADOS 1) C.G. S.X.
0.67 0 1822 Oryza sativa Os05g0408900 AK106750.1 - 1-D-deoxyxylulose 5-phosphate synthase 4e-9 At4g15560 CLA1 (CLOROPLASTOS ALTERADOS 1) C.G. S.X.
0.09 3e-5 52 Populus trichocarpa PtpAffx.59037.1.S1_at CV282343 - - 1e-10 At3g21500 1-deoxy-D-xylulose-5-phosphate synthase C.G. S.X.
0.01 6e+0 32 Vitis vinifera 1612808_at CB004378 - - 1e+0 At5g49440 unknown protein C.G. S.X.
0.65 0 737 Zea mays Zm.18811.1.A1_at CK985724 deoxy xylulose synthase 1 - 6e-6 At4g15560 CLA1 (CLOROPLASTOS ALTERADOS 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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