Gene omics information

Query gene ID	Ta.3348.1.S1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	79.8	Ta.3348.1.S1_a_at	BJ314622	-	-	3e-52	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	S.X.	H.G.	Please select
0.77	90.8	Ta.27783.1.S1_at	BQ237765	-	-	2e-19	At4g15415	ATB' GAMMA	S.X.	H.G.	Please select
0.67	86.3	Ta.8457.2.A1_at	BQ161925	-	-	1e+1	At4g00220	JLO (JAGGED LATERAL ORGANS)	S.X.	H.G.	Please select
0.63	83.1	TaAffx.11930.1.S1_s_at	CA639901	-	-	3e-5	At2g30330	GCN5L1 family protein	S.X.	H.G.	Please select
0.50	72.4	Ta.8457.1.A1_at	BE430699	-	-	6e+0	At2g20619	-	S.X.	H.G.	Please select
0.47	67.9	Ta.13995.1.S1_at	CK195574	-	-	1e-3	At5g56190	WD-40 repeat family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.7	98.4	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.3	98.2	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.9	98.0	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.7	97.9	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.0	97.4	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1	94.5	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.65	0	706	Ta.3348.2.S1_a_at	BJ267603	-	-	6e-27	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select
0.35	8e-96	351	Ta.14532.1.S1_at	CD900916	-	-	4e-45	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.28	6e-47	188	Ta.20628.1.S1_at	CA486841	-	-	7e-49	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.26	1e-45	184	Ta.2711.1.S1_x_at	M62720.1	ubiquitin carrier protein	-	7e-59	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.31	9e-40	165	TaAffx.86053.1.S1_at	CA624819	-	-	4e-29	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select
0.24	9e-40	165	Ta.829.1.S1_at	BJ283440	-	-	2e-47	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.02	1e-1	38	TaAffx.86924.1.S1_at	CA598737	-	-	3e-1	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	C.G.	S.X.	Please select
0.03	1e-1	38	TaAffx.86924.2.S1_at	CA610761	-	-	1e-1	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	C.G.	S.X.	Please select
0.03	6e-1	36	Ta.18982.1.S1_at	CA628383	-	-	2e+0	At1g58100	TCP family transcription factor, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	3e-52	206	Arabidopsis thaliana	At1g14400	838002	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	ubiquitin carrier protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.40	4e-67	256	Glycine max	Gma.3735.3.S1_x_at	BU764012	-	-	1e-67	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.69	0	1076	Hordeum vulgare	Contig7567_at	Contig7567	-	-	5e-56	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select
0.40	1e-163	577	Oryza sativa	Os05g0182500	AK112003.1	-	Rad6 (Ubiquitin carrier protein)	1e-60	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	1e-73	278	Populus trichocarpa	PtpAffx.5122.4.S1_s_at	CV260788	histone ubiquitination proteins group	-	3e-76	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	1e-70	266	Vitis vinifera	1619316_s_at	CB970236	hypothetical protein LOC100261243	-	3e-67	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select
0.35	8e-97	353	Zea mays	Zm.3859.1.A1_at	BM335999	ubiquitin-conjugating enzyme E2-17 kDa	-	4e-57	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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