Gene omics information

Query gene ID	Ta.3160.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.1	Ta.3160.1.S1_at	BJ223960	-	-	5e+0	At4g10870	unknown protein	S.X.	H.G.	Please select
0.60	81.0	Ta.19150.1.S1_x_at	CA642565	-	-	2e+1	At5g24580	copper-binding family protein	S.X.	H.G.	Please select
0.56	78.6	Ta.24723.1.S1_x_at	CA667447	-	-	2e+0	At3g05950	germin-like protein, putative	S.X.	H.G.	Please select
0.53	74.9	Ta.3118.1.S1_at	BE515437	-	-	5e-4	At1g27140	ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14)	S.X.	H.G.	Please select
0.39	56.1	Ta.27750.1.S1_at	CD373503	pSBGer3 protein	-	1e+1	At4g38270	GAUT3 (Galacturonosyltransferase 3)	S.X.	H.G.	Please select
0.36	51.9	Ta.8955.1.S1_at	X85227.1	pox1 protein	-	2e-1	At5g05340	peroxidase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
82.4	100.0	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
71.6	100.0	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
42.1	99.9	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
38.6	99.9	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
36.4	99.9	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
28.5	99.8	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
21.7	99.8	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.8	96.0	GSM314266	tissue type: seedling, leaf - rep1	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	6e-46	184	TaAffx.109424.1.S1_at	CD923526	-	-	4e+0	At5g17165	unknown protein	C.G.	S.X.	Please select
0.23	2e-33	143	Ta.28827.1.S1_at	BQ800700	-	-	5e+0	At4g36880	CP1 (CYSTEINE PROTEINASE1)	C.G.	S.X.	Please select
0.19	9e-11	67	Ta.28126.2.S1_a_at	CA630337	-	-	4e+0	At5g37200	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	6e-6	52	Ta.14528.1.S1_at	BJ308556	histone deacetylase HDAC2	-	9e-1	At3g59680	unknown protein	C.G.	S.X.	Please select
0.02	6e-6	52	Ta.14528.1.S1_s_at	BJ308556	-	-	9e-1	At3g59680	unknown protein	C.G.	S.X.	Please select
0.03	9e-5	48	Ta.29907.1.A1_at	CK198695	Transcription factor HBP-1b(c1)	-	5e-7	At5g06950	AHBP-1B	C.G.	S.X.	Please select
0.01	5e-3	42	Ta.1806.1.S1_at	BE445559	-	-	9e-11	At4g32760	protein transporter	C.G.	S.X.	Please select
0.01	5e-3	42	Ta.1806.1.S1_a_at	BE445559	-	-	9e-11	At4g32760	protein transporter	C.G.	S.X.	Please select
0.02	3e-1	36	Ta.9060.1.S1_at	CD897610	-	-	9e+0	At1g02900	RALF1 (RAPID ALKALINIZATION FACTOR 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At4g10870	826686	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.44524.1.S1_s_at	BE583670	-	-	3e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select
0.40	4e-76	284	Hordeum vulgare	Contig19171_at	Contig19171	-	-	2e+0	At4g24974	-	C.G.	S.X.	Please select
0.22	1e-26	121	Oryza sativa	Os03g0734200	AK106537.1	-	Hypothetical protein	1e+0	At5g55570	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-2	40	Populus trichocarpa	PtpAffx.217604.1.S1_at	pmrna32940	hypothetical protein	-	4e+0	At5g37550	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e-1	34	Vitis vinifera	1620137_s_at	CB911784	hypothetical protein LOC100260466	-	3e+0	At3g20510	unknown protein	C.G.	S.X.	Please select
0.24	4e-14	77	Zea mays	Zm.1458.1.S1_at	BM418233	hypothetical protein LOC100275716	-	1e+0	At5g59610	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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